Browse Element(s) Details


OsAffx.14688.1.S1_at

Description tigr:9633.m01255
TID=OsAffx.14688.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1436011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14320Os.40626.2.S1_x_at9/115+8032834..8037237transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g14320Os.40626.1.S1_at7/115+8032834..8037237transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g14330Os.18412.1.S1_a_at1/115+8038722..8043362retrotransposon protein, putative, unclassified
LOC_Os05g14340NANA5+8045375..8051530retrotransposon protein, putative, unclassified
LOC_Os05g14350NANA5+8052137..8055474retrotransposon protein, putative, unclassified
LOC_Os05g14360OsAffx.14688.1.S1_at11/115+8059716..8061382expressed protein
LOC_Os05g14370OsAffx.14689.1.S1_at11/115+8066205..8067888WRKY DNA binding domain containing protein, expressed
LOC_Os05g14380OsAffx.27864.5.S1_x_at9/115+8077150..8083010hypothetical protein
LOC_Os05g14380OsAffx.27864.4.S1_x_at9/115+8077150..8083010hypothetical protein
LOC_Os05g14380OsAffx.27864.1.S1_x_at8/115+8077150..8083010hypothetical protein
LOC_Os05g14390NANA5+8083913..8085998expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14688.1.S1_at--954--10151Chr05:8060548..8060572 (25 bp)
TATCTAGTACTGACTGCCATCCCAA
LOC_Os05g14360
OsAffx.14688.1.S1_at--129--6351Chr05:8060627..8060651 (25 bp)
GATGCTCACACCGTTGGAGGATGCC
LOC_Os05g14360
OsAffx.14688.1.S1_at--580--991Chr05:8060644..8060668 (25 bp)
AGGATGCCCTTGTGCACAGTTCAGG
LOC_Os05g14360
OsAffx.14688.1.S1_at--643--10531Chr05:8060663..8060687 (25 bp)
TTCAGGGCTACCAATCGAGGTCGTT
LOC_Os05g14360
OsAffx.14688.1.S1_at--920--4731Chr05:8060698..8060722 (25 bp)
GCTGTTCCTATGACATGTTCCTGAG
LOC_Os05g14360
OsAffx.14688.1.S1_at--566--691Chr05:8060781..8060805 (25 bp)
ATGAGCCACATGATCCCAGGTGATT
LOC_Os05g14360
OsAffx.14688.1.S1_at--884--3391Chr05:8060838..8060862 (25 bp)
CAGCTTGCGCTGACATTGTTGCATT
LOC_Os05g14360
OsAffx.14688.1.S1_at--545--8031Chr05:8060921..8060945 (25 bp)
GGAGTCAAACTCCACTGTGACAGAG
LOC_Os05g14360
OsAffx.14688.1.S1_at--165--1471Chr05:8061061..8061085 (25 bp)
AGAAGTGGCCATCCGAGATGCTTGA
LOC_Os05g14360
OsAffx.14688.1.S1_at--82--6271Chr05:8061077..8061101 (25 bp)
GATGCTTGAGGCAGCGGAAACCTTA
LOC_Os05g14360
OsAffx.14688.1.S1_at--845--8151Chr05:8061092..8061116 (25 bp)
GGAAACCTTACTAATGCTGTCGTGT
LOC_Os05g14360
Target Sequence 
TATCTAGTACTGACTGCCATCCCAACCAGGCCCGGCTGTTGCTTTCGCGCCACGCGGTGGAGGGCTCGCCGCTTCTGGGG
ATGCTCACACCGTTGGAGGATGCCCTTGTGCACAGTTCAGGGCTACCAATCGAGGTCGTTGACAGATATGGCTGTTCCTA
TGACATGTTCCTGAGGTATCTCGACTCCACCACTTCCTACAGACTTATTGTACAGTGGAGGAATTTCTTGGAAATGAGCC
ACATGATCCCAGGTGATTTGGTGAAGCTGGGTGCGTTTCGCTTCGAGGGGCAGCTTGCGCTGACATTGTTGCATTATGGG
AATGCCGGTAAGGCGAAGAAGGTCCTTGACAGAAAACTTAAGGAGAAGAAGGTGGAGTCAAACTCCACTGTGACAGAGAA
AAGCAAAGAGTTGACTTCCAGGGAGACAGAGGAAAGCAAGGAGGAGTTGACTTCCAGGAAGACAGATGCAAATGATGCGG
AGAGTGCTTCAAGTGTGGCAGAGGCAATCAAGAAGAAGTGGCCATCCGAGATGCTTGAGGCAGCGGAAACCTTACTAATG
CTGTCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis