Browse Element(s) Details


Os.52630.1.S1_at

Description gb:AK099152.1
DB_XREF= gi:32984361
TID=Os.52630.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023070H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023070H02, full insert sequence.
FL= gb:AK068407.1 gb:AK099152.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0422011/11Nitrogen regulatory protein P-II, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04200OsAffx.26726.1.S1_at7/115+1877124..1879153hypothetical protein
LOC_Os05g04210OsAffx.14536.1.S1_at11/115+1885939..1887306Cpm7, putative
LOC_Os05g04220Os.52630.1.S1_at11/115+1902299..1905266Nitrogen regulatory protein P-II, putative, expressed
LOC_Os05g04229OsAffx.10126.1.S1_x_at1/115+1906981..1907332NA
LOC_Os05g04240OsAffx.4247.1.S1_at11/115+1910002..1911806GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g04250OsAffx.27864.1.S1_x_at11/115+1914122..1915844hypothetical protein
LOC_Os05g04250OsAffx.27864.5.S1_x_at5/115+1914122..1915844hypothetical protein
LOC_Os05g04260OsAffx.27864.4.S1_x_at11/115+1917381..1920071AT hook motif-containing protein, putative
LOC_Os05g04270NANA5+1921542..1921805hypothetical protein
LOC_Os05g04280Os.10731.1.A1_a_at11/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04280Os.38764.1.S1_x_at8/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04280Os.47130.4.A1_x_at3/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04290Os.28943.1.S1_x_at4/115+1925157..1928383retrotransposon protein, putative, unclassified
LOC_Os05g04300NANA5+1929004..1932476retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0009416biological_processresponse to light stimulus
GO:0009718biological_processanthocyanin biosynthesis
GO:0009744biological_processresponse to sucrose stimulus
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52630.1.S1_at--12--3511Chr05:1904706..1904730 (25 bp)
CATGGAGGGTGCCTTATGTGTCATC
LOC_Os05g04220
Os.52630.1.S1_at--158--791Chr05:1904611..1904715 (25 bp)
ATGTGTCATCGGGTTTGCTGCAAAT
LOC_Os05g04220
Os.52630.1.S1_at--203--231Chr05:1902610..1903090 (25 bp)
ATATTTTTGATACCCGTGTCGGACG
LOC_Os05g04220
Os.52630.1.S1_at--467--1911Chr05:1902588..1902612 (25 bp)
ACGTGATCAGAATACGCACCGGCGA
LOC_Os05g04220
Os.52630.1.S1_at--726--9651Chr05:1902511..1902535 (25 bp)
TCAGCAATGCCGATCTCATGAGAGA
LOC_Os05g04220
Os.52630.1.S1_at--823--6011Chr05:1902492..1902516 (25 bp)
GAGAGAGCATGTTTCCTGTAGGTAC
LOC_Os05g04220
Os.52630.1.S1_at--629--6831Chr05:1902482..1902506 (25 bp)
GTTTCCTGTAGGTACCACTACTGCA
LOC_Os05g04220
Os.52630.1.S1_at--917--1971Chr05:1902463..1902487 (25 bp)
ACTGCACTCCCCTGTTGATTAGTGA
LOC_Os05g04220
Os.52630.1.S1_at--774--6291Chr05:1902434..1902458 (25 bp)
GATGATCATGCCTGTGTGAACTCCA
LOC_Os05g04220
Os.52630.1.S1_at--647--9811Chr05:1902399..1902423 (25 bp)
TAAAGCTGGAACGTAATGCCCCTCC
LOC_Os05g04220
Os.52630.1.S1_at--473--4791Chr05:1902366..1902390 (25 bp)
GCTCCAGGCATCTTACACTGAAAAT
LOC_Os05g04220
Target Sequence 
CATGGAGGGTGCCTTATGTGTCATCGGGTTTGCTGCAAATGGGGATCAGAGGCGTGACGGTGTCCGACGTGCGGGGTTNC
GGCGCACAGGGCGGGTCAACTGAGAGGCATGAAGGGTCAGAATTTGCAGAAGATACATTTATTGATAAAGTTAAGATGGA
AATAGTGGTGTCCAAGGATCAGGTTGAAGCTGTTGTTGACAAGATAATTGAAAAGGCAAGAACAGGAGAAATTGGTGATG
GAAAAATATTTTTGATACCCGTGTCGGACGTGATCAGAATACGCACCGGCGAACGAGGGGAGCGAGCGGAGAGGATGGCC
GGAGGGCTGGCGGACAAGCTGTCCTCAGCAATGCCGATCTCATGAGAGAGCATGTTTCCTGTAGGTACCACTACTGCACT
CCCCTGTTGATTAGTGATGATGATGATCATGCCTGTGTGAACTCCAGCAGCAATAATAAAGCTGGAACGTAATGCCCCTC
CAGTCCAGGGCTCCAGGCATCTTACACTGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis