Browse Element(s) Details


OsAffx.4247.1.S1_at

Description tigr:9633.m00350
TID=OsAffx.4247.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT004397 putative lipase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0424011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04210OsAffx.14536.1.S1_at11/115+1885939..1887306Cpm7, putative
LOC_Os05g04220Os.52630.1.S1_at11/115+1902299..1905266Nitrogen regulatory protein P-II, putative, expressed
LOC_Os05g04229OsAffx.10126.1.S1_x_at1/115+1906981..1907332NA
LOC_Os05g04240OsAffx.4247.1.S1_at11/115+1910002..1911806GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g04250OsAffx.27864.1.S1_x_at11/115+1914122..1915844hypothetical protein
LOC_Os05g04250OsAffx.27864.5.S1_x_at5/115+1914122..1915844hypothetical protein
LOC_Os05g04260OsAffx.27864.4.S1_x_at11/115+1917381..1920071AT hook motif-containing protein, putative
LOC_Os05g04270NANA5+1921542..1921805hypothetical protein
LOC_Os05g04280Os.10731.1.A1_a_at11/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04280Os.38764.1.S1_x_at8/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04280Os.47130.4.A1_x_at3/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04290Os.28943.1.S1_x_at4/115+1925157..1928383retrotransposon protein, putative, unclassified
LOC_Os05g04300NANA5+1929004..1932476retrotransposon protein, putative, unclassified
LOC_Os05g04310NANA5+1935381..1935698hypothetical protein
LOC_Os05g04320NANA5+1936783..1938945retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4247.1.S1_at--205--4571Chr05:1911310..1911334 (25 bp)
GCGCCCGCAAGTTCTGGGTGTACAA
LOC_Os05g04240
OsAffx.4247.1.S1_at--915--5171Chr05:1911316..1911340 (25 bp)
GCAAGTTCTGGGTGTACAACACGGG
LOC_Os05g04240
OsAffx.4247.1.S1_at--93--4551Chr05:1911508..1911532 (25 bp)
GCGCCACGGTGGTGTGCACCGACAT
LOC_Os05g04240
OsAffx.4247.1.S1_at--971--9031Chr05:1911522..1911546 (25 bp)
TGCACCGACATGTACGCGATCAAGT
LOC_Os05g04240
OsAffx.4247.1.S1_at--780--9951Chr05:1911534..1911558 (25 bp)
TACGCGATCAAGTACGAGCTGTTCG
LOC_Os05g04240
OsAffx.4247.1.S1_at--143--6451Chr05:1911539..1911563 (25 bp)
GATCAAGTACGAGCTGTTCGCCAAC
LOC_Os05g04240
OsAffx.4247.1.S1_at--104--1191Chr05:1911544..1911568 (25 bp)
AGTACGAGCTGTTCGCCAACCACAG
LOC_Os05g04240
OsAffx.4247.1.S1_at--887--8771Chr05:1911553..1911577 (25 bp)
TGTTCGCCAACCACAGCAGGTACGG
LOC_Os05g04240
OsAffx.4247.1.S1_at--476--2651Chr05:1911561..1911585 (25 bp)
AACCACAGCAGGTACGGCTTCGAGC
LOC_Os05g04240
OsAffx.4247.1.S1_at--1047--6011Chr05:1911684..1911708 (25 bp)
GAGAGGCACGTCATCTGGGACGGCG
LOC_Os05g04240
OsAffx.4247.1.S1_at--18--4651Chr05:1911706..1911730 (25 bp)
GCGTGCACTACACGGAGGACGCCAA
LOC_Os05g04240
Target Sequence 
GCGCCCGCAAGTTCTGGGTGTACAACACGGGGCCCATCGGCTGCCTCCCCCAAACGCTGGCGCTGCGGCAGAAGCCCGGC
GACGAGCTCGACGCCGCCGGCTGCCTCGCCGAGTACAACGCCGCGGCGAGGTCGTTCAACGCCGAGCTCGCCGCCGCGTG
CCGACGCCTCGCCGCGGAGCTCGGCGGCGGCGAGGACGGCGCCACGGTGGTGTGCACCGACATGTACGCGATCAAGTACG
AGCTGTTCGCCAACCACAGCAGGTACGGCTTCGAGCGGCCGCTGATGGCGTGCTGCGGCCATGGCGGGCCGCCGTACAAC
TACGCCAACCTCAAGACGTGCGGGCAGCCGACGGCGACGGCGTGCCCGGAGGGGGAGAGGCACGTCATCTGGGACGGCGT
GCACTACACGGAGGACGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis