Browse Element(s) Details


OsAffx.10126.1.S1_x_at

Description gb:NM_187114.1
DB_XREF= gi:34901313
GEN=OSJNBb0015I22.6
TID=OsAffx.10126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0015I22.6 (OSJNBb0015I22.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g042291/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04210OsAffx.14536.1.S1_at11/115+1885939..1887306Cpm7, putative
LOC_Os05g04220Os.52630.1.S1_at11/115+1902299..1905266Nitrogen regulatory protein P-II, putative, expressed
LOC_Os05g04229OsAffx.10126.1.S1_x_at1/115+1906981..1907332NA
LOC_Os05g04240OsAffx.4247.1.S1_at11/115+1910002..1911806GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g04250OsAffx.27864.1.S1_x_at11/115+1914122..1915844hypothetical protein
LOC_Os05g04250OsAffx.27864.5.S1_x_at5/115+1914122..1915844hypothetical protein
LOC_Os05g04260OsAffx.27864.4.S1_x_at11/115+1917381..1920071AT hook motif-containing protein, putative
LOC_Os05g04270NANA5+1921542..1921805hypothetical protein
LOC_Os05g04280Os.10731.1.A1_a_at11/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04280Os.38764.1.S1_x_at8/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04280Os.47130.4.A1_x_at3/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04290Os.28943.1.S1_x_at4/115+1925157..1928383retrotransposon protein, putative, unclassified
LOC_Os05g04300NANA5+1929004..1932476retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10126.1.S1_x_at--960--5811Chr07:15480485..15480509 (25 bp)
GAGCCCGTGTCGGTAGCACCGTCTA
NONE
OsAffx.10126.1.S1_x_at--565--7451Chr07:15480491..15480515 (25 bp)
GTGTCGGTAGCACCGTCTACACCAT
NONE
OsAffx.10126.1.S1_x_at--240--9872Chr07:15480508..15480532 (25 bp)
TACACCATCGCTCCGCCGGTCGAGG
NONE
OsAffx.10126.1.S1_x_at--951--7711Chr07:15480533..15480557 (25 bp)
GGGTGGCGCTTGCAGCAGCTGGCTC
NONE
OsAffx.10126.1.S1_x_at--553--3411Chr07:15480545..15480569 (25 bp)
CAGCAGCTGGCTCGTTGGTGGTGGT
NONE
OsAffx.10126.1.S1_x_at--920--8431Chr07:15480569..15480593 (25 bp)
TGGCCATGGTGACGGCCAGCCACCA
NONE
OsAffx.10126.1.S1_x_at--346--9071Chr07:15480668..15480692 (25 bp)
TGCTTGGCGCTCGTCAAGGGCTCAA
NONE
OsAffx.10126.1.S1_x_at--488--10871Chr07:15480671..15480695 (25 bp)
TTGGCGCTCGTCAAGGGCTCAAGGC
NONE
OsAffx.10126.1.S1_x_at--1019--9392Chr07:15480678..15480702 (25 bp)
TCGTCAAGGGCTCAAGGCCTCAACG
NONE
OsAffx.10126.1.S1_x_at--251--9711Chr07:15480681..15480705 (25 bp)
TCAAGGGCTCAAGGCCTCAACGCTG
NONE
OsAffx.10126.1.S1_x_at--559--1072Chr07:15480684..15480708 (25 bp)
AGGGCTCAAGGCCTCAACGCTGCCT
NONE
Target Sequence 
GAGCCCGTGTCGGTAGCACCGTCTACACCATCGCTCCGCCGGTCGAGGGGGTGGCGCTTGCAGCAGCTGGCTCGTTGGTG
GTGGTGGCCATGGTGACGGCCAGCCACCACGCCGCCCAGTTCCTATCCCGGTCGCCGCTGCCCTTCTCCCCACCGTGCTG
CAGTGCCCTCCCGGCCGCCACCGTGCTTGGCGCTCGTCAAGGGCTCAAGGCCTCAACGCTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10126.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis