Browse Element(s) Details


Os.53201.1.S1_at

Description gb:AK071337.1
DB_XREF= gi:32981360
TID=Os.53201.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090P05, full insert sequence.
FL= gb:AK071337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2949011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29470Os.27789.1.A1_at2/116+16895518..16896664Peroxidase 1 precursor, putative, expressed
LOC_Os06g29480OsAffx.26961.1.S1_x_at1/116+16901951..16902985Transposable element protein, putative, Retrotrans_gag
LOC_Os06g29490Os.53201.1.S1_at11/116+16909988..16915627expressed protein
LOC_Os06g29490Os.53201.2.S1_x_at10/116+16909988..16915627expressed protein
LOC_Os06g29490OsAffx.32219.1.A1_x_at1/116+16909988..16915627expressed protein
LOC_Os06g29520OsAffx.15664.1.S1_at11/116+16919166..16921490retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29530NANA6+16922779..16924710retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29540OsAffx.27864.1.S1_x_at3/116+16926222..16927809hypothetical protein
LOC_Os06g29540OsAffx.27864.5.S1_x_at2/116+16926222..16927809hypothetical protein
LOC_Os06g29550OsAffx.27864.4.S1_x_at11/116+16929565..16931704AT hook motif-containing protein, putative
LOC_Os06g29560NANA6+16932185..16935299hypothetical protein
LOC_Os06g29570NANA6+16937529..16940275hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53201.1.S1_at--743--9731Chr06:16913610..16913634 (25 bp)
TAATATATGAGCCAAGCCTCCTGCC
LOC_Os06g29490
Os.53201.1.S1_at--943--231Chr06:16913612..16913636 (25 bp)
ATATATGAGCCAAGCCTCCTGCCTC
LOC_Os06g29490
Os.53201.1.S1_at--345--4451Chr06:16913625..16913649 (25 bp)
GCCTCCTGCCTCTCGTTTTTTGTTA
LOC_Os06g29490
Os.53201.1.S1_at--454--10211Chr06:16913660..16913684 (25 bp)
TATTCTGCTTTTTAAATCATATTAG
LOC_Os06g29490
Os.53201.1.S1_at--695--9871Chr06:16913687..16913711 (25 bp)
TACATGTCCATGCTACAAATCCCAG
LOC_Os06g29490
Os.53201.1.S1_at--339--8711Chr06:16913691..16913715 (25 bp)
TGTCCATGCTACAAATCCCAGCATT
LOC_Os06g29490
Os.53201.1.S1_at--154--4851Chr06:16913698..16913722 (25 bp)
GCTACAAATCCCAGCATTCACTTGG
LOC_Os06g29490
Os.53201.1.S1_at--483--2271Chr06:16913703..16913727 (25 bp)
AAATCCCAGCATTCACTTGGGCTTT
LOC_Os06g29490
Os.53201.1.S1_at--52--551Chr06:16913705..16913729 (25 bp)
ATCCCAGCATTCACTTGGGCTTTTT
LOC_Os06g29490
Os.53201.1.S1_at--233--3411Chr06:16913709..16913733 (25 bp)
CAGCATTCACTTGGGCTTTTTTTTA
LOC_Os06g29490
Os.53201.1.S1_at--654--7571Chr06:16913721..16913745 (25 bp)
GGGCTTTTTTTTATATTTCAGATCT
LOC_Os06g29490
Target Sequence 
TAATATATGAGCCAAGCCTCCTGCCTCTCGTTTTTTGTTAAAAAAAAATATATTCTGCTTTTTAAATCATATTAGCATAC
ATGTCCATGCTACAAATCCCAGCATTCACTTGGGCTTTTTTTTATATTTCAGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis