Browse Element(s) Details


OsAffx.25855.1.S1_at

Description tigr:9632.m00290
TID=OsAffx.25855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0382010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03790NANA4+1677240..1683394retrotransposon protein, putative, unclassified
LOC_Os04g03796Os.49328.1.S1_at11/114+1689101..1690041Subtilisin serine protease, putative, expressed
LOC_Os04g03802Os.7278.2.S1_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_x_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03810Os.51225.1.S1_at11/114+1701788..1707406Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03820OsAffx.25855.1.S1_at10/114+1708170..1708795hypothetical protein
LOC_Os04g03830Os.54228.1.S1_at11/114+1710306..1714386Calcium binding EGF domain containing protein, expressed
LOC_Os04g03840Os.12100.1.S1_at1/114+1721070..1721566retrotransposon protein, putative, unclassified
LOC_Os04g03850OsAffx.13648.1.S1_at11/114+1723719..1728137subtilase family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25855.1.S1_at--126--10331Chr04:1708235..1708259 (25 bp)
TTTCTTTCTCTCACTTTGCAAGCCA
LOC_Os04g03820
OsAffx.25855.1.S1_at--140--10591Chr04:1708240..1708264 (25 bp)
TTCTCTCACTTTGCAAGCCAGTTCA
LOC_Os04g03820
OsAffx.25855.1.S1_at--317--9531Chr04:1708243..1708267 (25 bp)
TCTCACTTTGCAAGCCAGTTCACTA
LOC_Os04g03820
OsAffx.25855.1.S1_at--775--2031Chr04:1708247..1708271 (25 bp)
ACTTTGCAAGCCAGTTCACTACGGT
LOC_Os04g03820
OsAffx.25855.1.S1_at--1090--10711Chr04:1708250..1708274 (25 bp)
TTGCAAGCCAGTTCACTACGGTGAC
LOC_Os04g03820
OsAffx.25855.1.S1_at--914--4411Chr04:1708256..1708280 (25 bp)
GCCAGTTCACTACGGTGACAACGAT
LOC_Os04g03820
OsAffx.25855.1.S1_at--887--3251Chr04:1708274..1708298 (25 bp)
CAACGATGGCGGTCCAGCGGCACGT
LOC_Os04g03820
OsAffx.25855.1.S1_at--822--3971NONE
CGGTCCAGCGGCACGTGAGGAGGCA
NONE
OsAffx.25855.1.S1_at--726--8251Chr04:1708708..1708732 (25 bp)
GGCAGGCGGTATAATAGACCGCATA
LOC_Os04g03820
OsAffx.25855.1.S1_at--1054--5491Chr04:1708734..1708758 (25 bp)
GAAAAACAACTTTTGCACACGGTTG
LOC_Os04g03820
OsAffx.25855.1.S1_at--179--2531Chr04:1708741..1708765 (25 bp)
AACTTTTGCACACGGTTGTGCCGCC
LOC_Os04g03820
Target Sequence 
TTTCTTTCTCTCACTTTGCAAGCCAGTTCACTACGGTGACAACGATGGCGGTCCAGCGGCACGTGAGGAGGCAGGCGGTA
TAATAGACCGCATAAGAAAAACAACTTTTGCACACGGTTGTGCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis