Browse Element(s) Details


OsAffx.25857.1.S1_at

Description tigr:9632.m00297
TID=OsAffx.25857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0389011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03860Os.47910.1.S1_at11/114+1741578..1746940expressed protein
LOC_Os04g03870OsAffx.13649.1.S1_at11/114+1754143..1755585Cytochrome P450 family protein, expressed
LOC_Os04g03880OsAffx.13650.1.S1_at11/114+1757251..1761044hypothetical protein
LOC_Os04g03884Os.49504.1.S1_at11/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03884Os.51175.1.S1_x_at6/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03890OsAffx.25857.1.S1_at11/114+1767030..1768484Cytochrome P450 family protein
LOC_Os04g03910OsAffx.3714.1.S1_at11/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.48715.1.A1_x_at4/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_x_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03920Os.54951.1.S1_at11/114+1778564..1780107expressed protein
LOC_Os04g03930OsAffx.3715.1.S1_at11/114+1780402..1782118hypothetical protein
LOC_Os04g03940NANA4+1782696..1787834retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03950OsAffx.1412.2.S1_at2/114+1789130..1792056retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25857.1.S1_at--314--9091Chr04:1767577..1767601 (25 bp)
TGCTCAACGCGGAGGCGCAGAGCAA
LOC_Os04g03890
OsAffx.25857.1.S1_at--344--611Chr04:1767488..1767512 (25 bp)
ATGCGCGCCGTGATTCTCGAGAGCC
LOC_Os04g03890
OsAffx.25857.1.S1_at--899--4231Chr04:1767481..1767505 (25 bp)
CCGTGATTCTCGAGAGCCTCCGGCT
LOC_Os04g03890
OsAffx.25857.1.S1_at--535--4351Chr04:1767449..1767473 (25 bp)
CCAGTGCCGTTCGTCATACGAGAAG
LOC_Os04g03890
OsAffx.25857.1.S1_at--157--10631Chr04:1767440..1767464 (25 bp)
TTCGTCATACGAGAAGTCGTCGGCG
LOC_Os04g03890
OsAffx.25857.1.S1_at--293--7772Chr04:1767402..1767426 (25 bp)
GGTGCTCGACGAGCTAGCGGCCATG
LOC_Os04g03890
OsAffx.25857.1.S1_at--521--5671Chr04:1767335..1767359 (25 bp)
GACATCGGGCGGGACAGCAAGGCTT
LOC_Os04g03890
OsAffx.25857.1.S1_at--522--2151Chr04:1767322..1767346 (25 bp)
ACAGCAAGGCTTGGAGGGATCCGAA
LOC_Os04g03890
OsAffx.25857.1.S1_at--963--4051Chr04:1767169..1767193 (25 bp)
CGATGGCGCACGTCGGGCTCTTCGT
LOC_Os04g03890
OsAffx.25857.1.S1_at--1041--8531Chr04:1767094..1767118 (25 bp)
TGGACCTGACGCAGCAGGACGACTT
LOC_Os04g03890
OsAffx.25857.1.S1_at--357--4091Chr04:1767075..1767099 (25 bp)
CGACTTCTTCAACGTGATGCGGACG
LOC_Os04g03890
Target Sequence 
TGCTCAACGCGGAGGCGCAGAGCAAGCTCCGCCGCGAGGTCGGCGACGGCGAGCACGTCCATGGGCGCCACCGCGGCCGC
ACGCCCTACATGCGCGCCGTGATTCTCGAGAGCCTCCGGCTGCACCCGCCAGTGCCGTTCGTCATACGAGAAGTCGTCGG
CGGCGCGGCGCCGCCGGTGCTCGACGAGCTAGCGGCCATGCCGATGCCGGGCGGCGGCGCGCGGGTGCACTTCGTGATCG
GGGACATCGGGCGGGACAGCAAGGCTTGGAGGGATCCGAAGGAGTTCCGGCCGGAGAGGTTCATGGCCGGCGGCGAGGCG
GAGGGAGTGGGCCCGGTGCCGGGGCCGAAGGAGGTGAGGATGATGCCGTTCGGGGCGGGGCGGAGGTCGTGCCCGGGCAT
GGGGGTGGCGATGGCGCACGTCGGGCTCTTCGTGGCGGCGCTGGTGCGCGAGTTCGAGTGGACGCCGGCGGCGGGTGGCG
GCGTGGACCTGACGCAGCAGGACGACTTCTTCAACGTGATGCGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis