Browse Element(s) Details


Os.2427.1.S1_at

Description gb:AU096632
DB_XREF= gi:8859314
DB_XREF=AU096632
CLONE=S14544
TID=Os.2427.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.2427 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177835.1 (A.thaliana) peroxidase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1046011/11Peroxidase 43 precursor, putative, expressed
LOC_Os02g192101/11WD-repeat protein 26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10430OsAffx.30915.1.S1_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10430OsAffx.30915.1.S1_x_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10434Os.53198.1.S1_at10/1111+5675569..5679503expressed protein
LOC_Os11g10440NANA11+5683496..5687241transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10450NANA11+5689779..5691743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10460OsAffx.18781.1.S1_x_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10460Os.2427.1.S1_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10470Os.2426.1.A1_at11/1111+5706101..5706713expressed protein
LOC_Os11g10480Os.12591.2.S1_x_at11/1111+5708122..5711756Alcohol dehydrogenase 1, putative, expressed
LOC_Os11g10480Os.57464.1.S1_x_at8/1111+5708122..5711756Alcohol dehydrogenase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2427.1.S1_at--375--1371Chr11:5695970..5695994 (25 bp)
AGAGCTATTAGCTGGTAGAATGAGA
LOC_Os11g10460
Os.2427.1.S1_at--449--671Chr11:5695946..5695970 (25 bp)
ATGAAAATTAATCATCCATGGTTGG
LOC_Os11g10460
Os.2427.1.S1_at--225--7912Chr02:11203518..11203547 (23 bp)
GGTTGGCATAATTTTAATTTCTTCT
LOC_Os02g19210
Os.2427.1.S1_at--744--8211Chr11:5695852..5695876 (25 bp)
GGAATTGATCAAGTTCATGTGCATC
LOC_Os11g10460
Os.2427.1.S1_at--884--1211Chr11:5695841..5695865 (25 bp)
AGTTCATGTGCATCTTGCTGGGACA
LOC_Os11g10460
Os.2427.1.S1_at--420--772Chr11:5695836..5695860 (25 bp)
ATGTGCATCTTGCTGGGACAGAAGA
LOC_Os11g10460
Os.2427.1.S1_at--1109--5991Chr11:5695810..5695834 (25 bp)
GAGAGAAATTTTGCATAAAGGTCCA
LOC_Os11g10460
Os.2427.1.S1_at--752--51Chr11:5695771..5695795 (25 bp)
ATTGAGGATCTGTGCAGTTTTCTTC
LOC_Os11g10460
Os.2427.1.S1_at--396--9791Chr11:5695700..5695724 (25 bp)
TAAGATAAATTTGGTCTACATGTTT
LOC_Os11g10460
Os.2427.1.S1_at--532--3151Chr11:5695574..5695598 (25 bp)
AATTCATTGATTCTAAGTGGTGCCA
LOC_Os11g10460
Os.2427.1.S1_at--586--1091Chr11:5695559..5695583 (25 bp)
AGTGGTGCCAAACCTCTGTAACGAT
LOC_Os11g10460
Target Sequence 
AGAGCTATTAGCTGGTAGAATGAGATGAAAATTAATCATCCATGGTTGGCATAATTTTAATTTCTTCTTGAAATCAACAA
AATTGTGTAGATCATAATTAAATTACTGGAAATTAAAAGGAATTGATCAAGTTCATGTGCATCTTGCTGGGACAGAAGAA
GAGAGAAATTTTGCATAAAGGTCCAAAAATATTAAATTAATTGAGGATCTGTGCAGTTTTCTTCTTTTCTGGGGTCTCAG
AAGATGGAATATATACAGAGAGAGGGGTTATAAGATAAATTTGGTCTACATGTTTATATATATACATATATGTACAAGTG
AGATATAGTCANNNTTGTTCTTGGGTTTGGGGTATTTTGTTGATTTGTTNCCGAGTGAAACTGTAAAGAAGTGTTGAATT
CATTGATTCTAAGTGGTGCCAAACCTCTGTAACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis