Browse Element(s) Details


Os.12591.2.S1_x_at

Description gb:AK061267.1
DB_XREF= gi:32971285
TID=Os.12591.2
CNT=47
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12591 (NCBI UniGene Cluster)
UG_TITLE=O. sativa mRNA for alcohol dehydrogenase 1
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C12, full insert sequence.
FL= gb:AK061267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1048011/11Alcohol dehydrogenase 1, putative, expressed
LOC_Os11g105101/11Alcohol dehydrogenase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10440NANA11+5683496..5687241transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10450NANA11+5689779..5691743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10460OsAffx.18781.1.S1_x_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10460Os.2427.1.S1_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10470Os.2426.1.A1_at11/1111+5706101..5706713expressed protein
LOC_Os11g10480Os.12591.2.S1_x_at11/1111+5708122..5711756Alcohol dehydrogenase 1, putative, expressed
LOC_Os11g10480Os.57464.1.S1_x_at8/1111+5708122..5711756Alcohol dehydrogenase 1, putative, expressed
LOC_Os11g10490OsAffx.32023.1.S1_at10/1111+5724289..5728101transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10500OsAffx.10633.1.S1_at8/1111+5732590..5738801retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0045333biological_processcellular respiration
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0004327molecular_functionformaldehyde dehydrogenase (glutathione) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12591.2.S1_x_at--835--4951Chr11:5709013..5709034 (22 bp)
GCATTTGAATGTGTTCATGATGGCT
LOC_Os11g10480
Os.12591.2.S1_x_at--1082--6671Chr11:5708898..5708922 (25 bp)
GTTGCTGTTTTGGTCGGCGTGCCAC
LOC_Os11g10480
Os.12591.2.S1_x_at--1072--10231Chr11:5708890..5708914 (25 bp)
TTTGGTCGGCGTGCCACACAAGGAC
LOC_Os11g10480
Os.12591.2.S1_x_at--712--1811Chr11:5708873..5708897 (25 bp)
ACAAGGACGCCGAGTTCAAGACCCA
LOC_Os11g10480
Os.12591.2.S1_x_at--545--1212Chr11:5708861..5708885 (25 bp)
AGTTCAAGACCCACCCGATGAACTT
LOC_Os11g10480
Os.12591.2.S1_x_at--1076--8971Chr11:5708843..5708867 (25 bp)
TGAACTTCCTGAACGAGAGGACTCT
LOC_Os11g10480
Os.12591.2.S1_x_at--883--6011Chr11:5708829..5708853 (25 bp)
GAGAGGACTCTCAAGGGAACCTTCT
LOC_Os11g10480
Os.12591.2.S1_x_at--1053--7591Chr11:5708815..5708839 (25 bp)
GGGAACCTTCTTCGGCAACTACAAG
LOC_Os11g10480
Os.12591.2.S1_x_at--107--2591Chr11:5708772..5708796 (25 bp)
AACGTCGTCGAGCTCTACATGAAGA
LOC_Os11g10480
Os.12591.2.S1_x_at--302--1771Chr11:5708522..5708546 (25 bp)
ACCTGATGCACAAGGGCGAGGGCAT
LOC_Os11g10480
Os.12591.2.S1_x_at--441--3531Chr11:5708488..5708512 (25 bp)
CATCCGCATGGAGAACTGAGGTTTT
LOC_Os11g10480
Target Sequence 
GCATTTGAATGTGTTCATGATGGCTGGGGTGTTGCTGTTTTGGTCGGCGTGCCACACAAGGACGCCGAGTTCAAGACCCA
CCCGATGAACTTCCTGAACGAGAGGACTCTCAAGGGAACCTTCTTCGGCAACTACAAGCCNCGCGCACCGATCTGCCCAA
CGTCGTCGAGCTCTACATGAAGAAGGAGCTGGAGGTGGAGAAGTTCATCACACACAGCGTGCCGTTCTCGGAGATCAACA
CGGCGTTCGACCTGATGCACAAGGGCGAGGGCATCCGCTGCATCATCCGCATGGAGAACTGAGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12591.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis