Browse Element(s) Details


Os.2426.1.A1_at

Description gb:CA759372
DB_XREF= gi:25803411
DB_XREF=BR060011A10G05.ab1
CLONE=BR060011A10G05.ab1
TID=Os.2426.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.2426 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1047011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10440NANA11+5683496..5687241transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10450NANA11+5689779..5691743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10460OsAffx.18781.1.S1_x_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10460Os.2427.1.S1_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10470Os.2426.1.A1_at11/1111+5706101..5706713expressed protein
LOC_Os11g10480Os.12591.2.S1_x_at11/1111+5708122..5711756Alcohol dehydrogenase 1, putative, expressed
LOC_Os11g10480Os.57464.1.S1_x_at8/1111+5708122..5711756Alcohol dehydrogenase 1, putative, expressed
LOC_Os11g10490OsAffx.32023.1.S1_at10/1111+5724289..5728101transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2426.1.A1_at--675--1171Chr11:5706610..5706634 (25 bp)
AGTAAGTGATGGGTTTGAGCTGCTT
LOC_Os11g10470
Os.2426.1.A1_at--554--1511Chr11:5706535..5706559 (25 bp)
AGCAGCAACCTGTAGATCAGAATCA
LOC_Os11g10470
Os.2426.1.A1_at--594--5231Chr11:5706501..5706525 (25 bp)
GAATCTGTACTGCTCGAAGTCGAAG
LOC_Os11g10470
Os.2426.1.A1_at--576--811Chr11:5706421..5706445 (25 bp)
ATGGTGATCATCATGCTGGTGTGGA
LOC_Os11g10470
Os.2426.1.A1_at--1100--9651Chr11:5706353..5706377 (25 bp)
TCAGCTCCAATCTTGATGTACCAGT
LOC_Os11g10470
Os.2426.1.A1_at--363--3071Chr11:5706345..5706369 (25 bp)
AATCTTGATGTACCAGTTCCCCTTC
LOC_Os11g10470
Os.2426.1.A1_at--1135--7871Chr11:5706290..5706314 (25 bp)
GGTTCAGATGAATTCAGTGCATAGA
LOC_Os11g10470
Os.2426.1.A1_at--720--8171Chr11:5706242..5706266 (25 bp)
GGAACTTCTTGTTGATTCAGGCCTT
LOC_Os11g10470
Os.2426.1.A1_at--525--6551Chr11:5706229..5706253 (25 bp)
GATTCAGGCCTTTTCTTTGGCCGTT
LOC_Os11g10470
Os.2426.1.A1_at--997--10311Chr11:5706206..5706230 (25 bp)
TTTCTTTGTTTGTTCTTCTCTCTTT
LOC_Os11g10470
Os.2426.1.A1_at--881--2831Chr11:5706132..5706156 (25 bp)
AAGTCTTGAGGTATTTTGCGAACGA
LOC_Os11g10470
Target Sequence 
AGTAAGTGATGGGTTTGAGCTGCTTGGGTGCTGGGATGATGGGGAAGAAGAAGGTGTCGCCGGCGAAGCAGCAGCAGCAG
CAACCTGTAGATCAGAATCAGCAGCAGAAGAATCTGTACTGCTCGAAGTCGAAGGATGCAGATGCTGCTGAAGTTGGTGA
GAAGGAGAAGAAGATTGGAGGAGGATCAGATGGTGATCATCATGCTGGTGTGGAGAAGGTCGAGATGAGGAAGAAGAAGA
GTGGATCATCATCATCATCAGCTCCAATCTTGATGTACCAGTTCCCCTTCCACTCCCGCCCTGGCTTGCTNTGAATTATT
GGTTCAGATGAATTCAGTGCATAGAAATTCGGTTTTAATTTGATTTTAGGAACTTCTTGTTGATTCAGGCCTTTTCTTTG
GCCGTTTCTTTGTTTGTTCTTCTCTCTTTCTTTTTAGCTGTGTAATCACAAACAACACACATTGNAAGCTTATAAATTAA
GTCTTGAGGTATTTTGCGAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2426.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis