Browse Element(s) Details


OsAffx.18781.1.S1_x_at

Description tigr:9639.m00987
TID=OsAffx.18781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1046011/11Peroxidase 43 precursor, putative, expressed
LOC_Os12g089201/11Peroxidase 43 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10430OsAffx.30915.1.S1_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10430OsAffx.30915.1.S1_x_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10434Os.53198.1.S1_at10/1111+5675569..5679503expressed protein
LOC_Os11g10440NANA11+5683496..5687241transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10450NANA11+5689779..5691743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10460OsAffx.18781.1.S1_x_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10460Os.2427.1.S1_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10470Os.2426.1.A1_at11/1111+5706101..5706713expressed protein
LOC_Os11g10480Os.12591.2.S1_x_at11/1111+5708122..5711756Alcohol dehydrogenase 1, putative, expressed
LOC_Os11g10480Os.57464.1.S1_x_at8/1111+5708122..5711756Alcohol dehydrogenase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18781.1.S1_x_at--651--9311Chr11:5696705..5696929 (25 bp)
TCGCCTTCACGGGTGGGCCGTCGTT
LOC_Os11g10460
OsAffx.18781.1.S1_x_at--15--4411Chr11:5696703..5696927 (25 bp)
GCCTTCACGGGTGGGCCGTCGTTCG
LOC_Os11g10460
OsAffx.18781.1.S1_x_at--288--8652Chr12:4652910..4652933 (24 bp)
TGGGCCGTCGTTCGACGTGCCGACG
LOC_Os12g08920
OsAffx.18781.1.S1_x_at--700--1911Chr11:5696657..5696681 (25 bp)
ACGGGCGGACGTCGAGCCTCCGCGA
LOC_Os11g10460
OsAffx.18781.1.S1_x_at--261--1911Chr11:5696627..5696651 (25 bp)
ACGTGCTCCCCGACGTCAAGGACTC
LOC_Os11g10460
OsAffx.18781.1.S1_x_at--838--1891Chr11:5696615..5696639 (25 bp)
ACGTCAAGGACTCCATCGACGTCCT
LOC_Os11g10460
OsAffx.18781.1.S1_x_at--698--4531Chr11:5696577..5696601 (25 bp)
GCCGCCAATGGCCTCGACGACAAGG
LOC_Os11g10460
OsAffx.18781.1.S1_x_at--1097--4651Chr11:5696395..5696419 (25 bp)
GCGTGCTTCTTCCTGCAGGACAGGC
LOC_Os11g10460
OsAffx.18781.1.S1_x_at--214--10551Chr11:5696389..5696413 (25 bp)
TTCTTCCTGCAGGACAGGCTGTACA
LOC_Os11g10460
OsAffx.18781.1.S1_x_at--669--891Chr11:5696316..5696340 (25 bp)
AGGCGTTCCTCTCGGAGCTCCAGTC
LOC_Os11g10460
OsAffx.18781.1.S1_x_at--475--8251Chr11:5696245..5696269 (25 bp)
GGCAGCGAGGCCGAGTTCGACACCT
LOC_Os11g10460
Target Sequence 
TCGCCTTCACGGGTGGGCCGTCGTTCGACGTGCCGACGGGGCGGCGCGACGGGCGGACGTCGAGCCTCCGCGACGCCGAC
GTGCTCCCCGACGTCAAGGACTCCATCGACGTCCTCCGCTCCAAGTTCGCCGCCAATGGCCTCGACGACAAGGACCTCGT
CCTCCTCAGCTCGGCGCACACGGTGGGGACGACGGCGTGCTTCTTCCTGCAGGACAGGCTGTACAACTTCCCGCTCGCCG
GCGGCGGCCGCGGCGCGGACCCGTCGATCCCGGAGGCGTTCCTCTCGGAGCTCCAGTCCCGGTGCGCCCCCGGCGACTTC
AACACGCGGCTGCCGCTCGACCGCGGCAGCGAGGCCGAGTTCGACACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18781.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis