Browse Element(s) Details


OsAffx.15672.1.S1_at

Description tigr:9634.m02865
TID=OsAffx.15672.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATE efflux family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g192302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19210Os.17401.1.S1_at11/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19210Os.2427.1.S1_at1/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19220Os.27045.1.S1_a_at11/112+11209105..11217046expressed protein
LOC_Os02g19230OsAffx.12116.1.S1_at11/112+11223363..11225006hypothetical protein
LOC_Os02g19230OsAffx.15672.1.S1_x_at4/112+11223363..11225006hypothetical protein
LOC_Os02g19230OsAffx.15672.1.S1_at2/112+11223363..11225006hypothetical protein
LOC_Os02g19240OsAffx.24322.1.S1_at11/112+11227245..11227445hypothetical protein
LOC_Os02g19250OsAffx.31133.2.S1_at1/112+11227974..11230703transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15672.1.S1_at--173--4111Chr06:17201912..17201936 (25 bp)
CGAAGAGAAAATGCCCGTGGTGTTG
NONE
OsAffx.15672.1.S1_at--1044--2691Chr06:17202056..17202080 (25 bp)
AAGCTTGAGTCAAGTTAGAGGCCAA
NONE
OsAffx.15672.1.S1_at--302--7592Chr06:17202091..17202289 (25 bp)
GGGCTAGTAATATGCGAGCTAAGAG
NONE
OsAffx.15672.1.S1_at--383--8131Chr06:17202293..17202317 (25 bp)
GGACATGATTAGAGACATCCATAGT
NONE
OsAffx.15672.1.S1_at--11--5671Chr06:17202306..17202330 (25 bp)
GACATCCATAGTGAGCATGTGAGCA
NONE
OsAffx.15672.1.S1_at--76--5011Chr06:17202320..17202344 (25 bp)
GCATGTGAGCAAGGCATTAGGTTGT
NONE
OsAffx.15672.1.S1_at--301--10072Chr06:17202337..17202361 (25 bp)
TAGGTTGTGGGCTACTTCAAAGTGG
NONE
OsAffx.15672.1.S1_at--1005--2871Chr06:17202364..17202388 (25 bp)
AAGGGTTGAACCAAGAGCAATCTCT
NONE
OsAffx.15672.1.S1_at--90--5431Chr06:17202371..17202395 (25 bp)
GAACCAAGAGCAATCTCTTCAAGGG
NONE
OsAffx.15672.1.S1_at--530--2831Chr06:17202437..17202461 (25 bp)
AAGTTTGGTAGATATGTTCCCAACA
NONE
OsAffx.15672.1.S1_at--1089--8731Chr06:17202451..17202475 (25 bp)
TGTTCCCAACAATTGTTGAAGTGCT
NONE
Target Sequence 
CGAAGAGAAAATGCCCGTGGTGTTGAGGTACGTTGATAAATGTGGAATTGTGAAAGAAAGGTTTGTTGGTGTTGTTCATG
TGAAGGAAACAACAGCCTCATACCTCAAGGCTTCTATTGATACTCTAATGGTAGATTTTAATCTAAGCTTGAGTCAAGTT
AGAGGCCAAGGATATGATGGGGCTAGTAATATGCGAGCTAAGAGAAGGGACATGATTAGAGACATCCATAGTGAGCATGT
GAGCAAGGCATTAGGTTGTGGGCTACTTCAAAGTGGAAAAGGGTTGAACCAAGAGCAATCTCTTCAAGGGCCAGGAGATA
CTCGTTGGAGTTCTCATTACAAAACTCTCAAAAGTTTGGTAGATATGTTCCCAACAATTGTTGAAGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis