Browse Element(s) Details


OsAffx.24433.1.S1_at

Description tigr:9630.m02498
TID=OsAffx.24433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2651011/11hypothetical protein
LOC_Os04g288201/11expressed protein
LOC_Os02g212701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26470OsAffx.2760.1.S1_at11/112+15537844..15538277expressed protein
LOC_Os02g26480Os.49460.1.S1_at10/112+15543448..15552430Serine carboxypeptidase I precursor, putative, expressed
LOC_Os02g26490OsAffx.20858.5.S1_x_at8/112+15552665..15555486hypothetical protein
LOC_Os02g26490OsAffx.20858.1.S1_x_at6/112+15552665..15555486hypothetical protein
LOC_Os02g26490OsAffx.20858.4.S1_x_at4/112+15552665..15555486hypothetical protein
LOC_Os02g26500Os.11575.4.S1_x_at4/112+15556364..15560053transposon protein, putative, Pong sub-class
LOC_Os02g26500Os.11575.3.S1_x_at1/112+15556364..15560053transposon protein, putative, Pong sub-class
LOC_Os02g26510OsAffx.24433.1.S1_at11/112+15560201..15562653hypothetical protein
LOC_Os02g26520OsAffx.12206.1.S1_at11/112+15565940..15567537hypothetical protein
LOC_Os02g26530OsAffx.24434.1.S1_at11/112+15568665..15569111hypothetical protein
LOC_Os02g26540NANA2+15571271..15571507hypothetical protein
LOC_Os02g26550OsAffx.24436.2.S1_at10/112+15578247..15584223expressed protein
LOC_Os02g26550Os.27457.1.S1_at2/112+15578247..15584223expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24433.1.S1_at--805--5231Chr02:15560756..15560780 (25 bp)
GAATCTCAAGGACTACCGTGTGGTG
LOC_Os02g26510
OsAffx.24433.1.S1_at--607--6892Chr02:15560699..15560723 (25 bp)
GTATAACGCGCCAATAACTTCAGAG
LOC_Os02g26510
OsAffx.24433.1.S1_at--355--5292Chr04:16880405..16880428 (24 bp)
GAAGGCATCCGGTCATACTATGGAT
LOC_Os04g28820
OsAffx.24433.1.S1_at--482--9931Chr02:15560563..15560587 (25 bp)
TACGATCCGTTGTCTTATCCGCTAT
LOC_Os02g26510
OsAffx.24433.1.S1_at--474--10151Chr02:15560548..15560572 (25 bp)
TATCCGCTATTCTTTCCTAGAGGTG
LOC_Os02g26510
OsAffx.24433.1.S1_at--1126--3411Chr02:15560339..15560363 (25 bp)
CAGACTGTGTGTTTCCGTGAGAGAC
LOC_Os02g26510
OsAffx.24433.1.S1_at--802--10651Chr02:15560327..15560351 (25 bp)
TTCCGTGAGAGACTACTACTGCTAC
LOC_Os02g26510
OsAffx.24433.1.S1_at--627--9071Chr02:15560308..15560332 (25 bp)
TGCTACAAGTTCCAAATGCGACCTG
LOC_Os02g26510
OsAffx.24433.1.S1_at--933--10191Chr02:15560280..15560304 (25 bp)
TATTCAACCCAATATTGCATGGCGG
LOC_Os02g26510
OsAffx.24433.1.S1_at--946--851Chr02:15560262..15560286 (25 bp)
ATGGCGGACGTCTTTTCCAACAGTT
LOC_Os02g26510
OsAffx.24433.1.S1_at--1034--2131Chr02:15560243..15560267 (25 bp)
ACAGTTTGCGGTTGATACATACATC
LOC_Os02g26510
Target Sequence 
GAATCTCAAGGACTACCGTGTGGTGTTAAACCTTGACCAATGGTTGGATCAGAGAACGTATAACGCGCCAATAACTTCAG
AGGTGGCTGCGGTTTGGGTCGAGGGAAACGAGCGACGAAAAACATTTGATAAGAGTGTAATCCTACAAGGGAACAACAAC
GAAATAGAAGGCATCCGGTCATACTATGGATGCTACGATCCGTTGTCTTATCCGCTATTCTTTCCTAGAGGTGAATTGGG
TTGGCATGCTGATATACCAAAGTTTGGTGTTAACCTAGAAGATGTGATGAAGGCTCGTCGTAATCGCAACAACAATGACG
AGAACCCAGATTCAAGTAACAGACTGTGTGTTTCCGTGAGAGACTACTACTGCTACAAGTTCCAAATGCGACCTGGCATA
TTCAACCCAATATTGCATGGCGGACGTCTTTTCCAACAGTTTGCGGTTGATACATACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis