Browse Element(s) Details


Os.39418.1.S1_s_at

Description gb:CF328460
DB_XREF= gi:33805165
DB_XREF=NACL--03-G03.g1
CLONE=NACL--03-G03
TID=Os.39418.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39418 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_178745.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2644010/11prefoldin-related KE2 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26400OsAffx.12202.1.S1_at11/112+15496752..15501303nuclease, EndA/NucM family protein, expressed
LOC_Os02g26410Os.46012.2.S1_x_at6/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.46012.3.S1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.27088.1.A1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26420NANA2+15510255..15513417retrotransposon protein, putative, unclassified
LOC_Os02g26430Os.56922.1.S1_at11/112+15515627..15516852WRKY DNA binding domain containing protein, expressed
LOC_Os02g26440Os.39418.1.S1_s_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440OsAffx.12203.1.S1_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440Os.39418.1.S1_at4/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26450OsAffx.12204.1.S1_at11/112+15523769..15526038transposon protein, putative, unclassified
LOC_Os02g26460OsAffx.12205.1.S1_at11/112+15527268..15527984hAT dimerisation domain-containing protein, putative
LOC_Os02g26460OsAffx.15672.1.S1_x_at1/112+15527268..15527984hAT dimerisation domain-containing protein, putative
LOC_Os02g26470OsAffx.2760.1.S1_at11/112+15537844..15538277expressed protein
LOC_Os02g26480Os.49460.1.S1_at10/112+15543448..15552430Serine carboxypeptidase I precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39418.1.S1_s_at--446--8091Chr02:15518431..15518612 (25 bp)
GGACGAAGCCAACCGAGCGGCTTTC
LOC_Os02g26440
Os.39418.1.S1_s_at--638--1791Chr02:15518315..15518623 (25 bp)
ACCGAGCGGCTTTCGTGGAGCTGCA
NONE
Os.39418.1.S1_s_at--999--7971Chr02:15518629..15518653 (25 bp)
GGATGATCGACACCACCGGGAAGAT
LOC_Os02g26440
Os.39418.1.S1_s_at--892--10731Chr02:15520405..15520429 (25 bp)
TTGCAAACTCAGATGCGCTCTAAAG
LOC_Os02g26440
Os.39418.1.S1_s_at--50--2351Chr02:15520437..15520461 (25 bp)
AAAGAAGCGTGCTTACCTCACACTG
LOC_Os02g26440
Os.39418.1.S1_s_at--61--3751Chr02:15520453..15520477 (25 bp)
CTCACACTGGAGGAACTTCGCCAAT
LOC_Os02g26440
Os.39418.1.S1_s_at--1046--5471Chr02:15520465..15520489 (25 bp)
GAACTTCGCCAATTGCCAGATAATA
LOC_Os02g26440
Os.39418.1.S1_s_at--888--5851Chr02:15521492..15521516 (25 bp)
GAGCCAAAATCACTCCTGCTGAATG
LOC_Os02g26440
Os.39418.1.S1_s_at--677--5191Chr02:15521549..15521669 (25 bp)
GCAATAGCATCGATGCAGACTTCCA
LOC_Os02g26440
Os.39418.1.S1_s_at--469--5051Chr02:15521660..15521683 (24 bp)
GCAGACTTCCAAGGAATATCTTGAG
LOC_Os02g26440
Os.39418.1.S1_s_at--1112--5991Chr02:15521715..15521739 (25 bp)
GAGAGCTACTTCAGCAGGACCCTGG
LOC_Os02g26440
Target Sequence 
GGACGAAGCCAACCGAGCGGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGTTGCAAA
CTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCGCCAATTGCCAGATAATACA
AACACTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAGCAAGAACAAAAGCTTAA
TGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAAGGAATATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACA
TAAGAGAGCTACTTCAGCAGGACCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39418.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis