Browse Element(s) Details


Os.56922.1.S1_at

Description gb:AK110587.1
DB_XREF= gi:32995796
TID=Os.56922.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F03, full insert sequence.
FL= gb:AK110587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2643011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26390Os.9623.1.A1_at11/112+15490019..15492569expressed protein
LOC_Os02g26400OsAffx.12202.1.S1_at11/112+15496752..15501303nuclease, EndA/NucM family protein, expressed
LOC_Os02g26410Os.46012.2.S1_x_at6/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.46012.3.S1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.27088.1.A1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26420NANA2+15510255..15513417retrotransposon protein, putative, unclassified
LOC_Os02g26430Os.56922.1.S1_at11/112+15515627..15516852WRKY DNA binding domain containing protein, expressed
LOC_Os02g26440Os.39418.1.S1_s_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440OsAffx.12203.1.S1_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440Os.39418.1.S1_at4/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26450OsAffx.12204.1.S1_at11/112+15523769..15526038transposon protein, putative, unclassified
LOC_Os02g26460OsAffx.12205.1.S1_at11/112+15527268..15527984hAT dimerisation domain-containing protein, putative
LOC_Os02g26460OsAffx.15672.1.S1_x_at1/112+15527268..15527984hAT dimerisation domain-containing protein, putative
LOC_Os02g26470OsAffx.2760.1.S1_at11/112+15537844..15538277expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56922.1.S1_at--364--7291Chr02:15516218..15516242 (25 bp)
GTGCCGGCGATCAGCTCACGGAACG
LOC_Os02g26430
Os.56922.1.S1_at--186--4691Chr02:15516254..15516278 (25 bp)
GCGGACGACTATTCGTGGCGCAAGT
LOC_Os02g26430
Os.56922.1.S1_at--1137--511Chr02:15516538..15516562 (25 bp)
ATCGACGTCCCGATGAGGCGGCAAC
LOC_Os02g26430
Os.56922.1.S1_at--476--5151Chr02:15516558..15516582 (25 bp)
GCAACGACGACGGAGCACAGGACGA
LOC_Os02g26430
Os.56922.1.S1_at--1020--811Chr02:15516576..15516600 (25 bp)
AGGACGACTGACCAAACTACTGGAA
LOC_Os02g26430
Os.56922.1.S1_at--158--6771Chr02:15516692..15516716 (25 bp)
GTTAATTTCTTAGTGCTCTTTCATG
LOC_Os02g26430
Os.56922.1.S1_at--701--651Chr02:15516714..15516738 (25 bp)
ATGCACGTAGTATTTGCCAATTGCC
LOC_Os02g26430
Os.56922.1.S1_at--163--4391Chr02:15516729..15516753 (25 bp)
GCCAATTGCCATGTACATCATATCT
LOC_Os02g26430
Os.56922.1.S1_at--1043--5691Chr02:15516760..15516784 (25 bp)
GACTATTGACTGATGTGATATCCAT
LOC_Os02g26430
Os.56922.1.S1_at--956--3491Chr02:15516782..15516806 (25 bp)
CATGTAATTGATCTGCTACCTCCCT
LOC_Os02g26430
Os.56922.1.S1_at--128--3811Chr02:15516801..15516825 (25 bp)
CTCCCTCACTCTCTTGATTAAGTAT
LOC_Os02g26430
Target Sequence 
GTGCCGGCGATCAGCTCACGGAACGCCGACATCCCGGCGGACGACTATTCGTGGCGCAAGTACGGCCAGAAGCCCATCAA
AGGCTCGCCTTATCCACGCGGGTACTACAAGTGCAGCACGGTGCGCGGGTGCCCGGCGCGGAAGCACGTGGAGCGCGACC
CCGGCGAGCCGGCCATGCTCATCGTCACCTACGACGGCGACCACCGCCACGGGGAACCCGGCCATCGACGTCCCGATGAG
GCGGCAACGACGACGGAGCACAGGACGACTGACCAAACTACTGGAAGATTGCTCTAGATAGTAGTGTCTATGCATGTAGA
CTCTATAATCTATATATAGAAACAAACTAATCTAATCAATTGACCGTTTGAATATTGGTTAATTTCTTAGTGCTCTTTCA
TGCACGTAGTATTTGCCAATTGCCATGTACATCATATCTAGTTTAGACTATTGACTGATGTGATATCCATGTAATTGATC
TGCTACCTCCCTCACTCTCTTGATTAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis