Browse Element(s) Details


OsAffx.12207.1.S1_at

Description tigr:9630.m02503
TID=OsAffx.12207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY099876 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2656011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26520OsAffx.12206.1.S1_at11/112+15565940..15567537hypothetical protein
LOC_Os02g26530OsAffx.24434.1.S1_at11/112+15568665..15569111hypothetical protein
LOC_Os02g26540NANA2+15571271..15571507hypothetical protein
LOC_Os02g26550OsAffx.24436.2.S1_at10/112+15578247..15584223expressed protein
LOC_Os02g26550Os.27457.1.S1_at2/112+15578247..15584223expressed protein
LOC_Os02g26560OsAffx.12207.1.S1_at11/112+15589114..15591960expressed protein
LOC_Os02g26570Os.21854.2.S1_x_at2/112+15603222..15605304hypothetical protein
LOC_Os02g26580NANA2+15606200..15606556hypothetical protein
LOC_Os02g26590NANA2+15607457..15607705hypothetical protein
LOC_Os02g26600OsAffx.2763.1.S1_at11/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.5.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.2.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26614OsAffx.12208.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614Os.8966.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.18542.1.S1_x_at2/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.30422.1.S1_x_at1/112+15615138..15624114retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12207.1.S1_at--947--5691Chr02:15591379..15591403 (25 bp)
GACTCACTCAATTCAAGCTACAAGG
LOC_Os02g26560
OsAffx.12207.1.S1_at--508--2351Chr02:15591423..15591447 (25 bp)
AAAGCATATTTTGCGGCCTGTGTCA
LOC_Os02g26560
OsAffx.12207.1.S1_at--153--1051Chr02:15591447..15591471 (25 bp)
AGGTGCTTCACCATTTACAGTATGC
LOC_Os02g26560
OsAffx.12207.1.S1_at--234--5151Chr02:15591533..15591557 (25 bp)
GCAAAATGCAGTGCGGCCAGTGCTC
LOC_Os02g26560
OsAffx.12207.1.S1_at--1107--8431Chr02:15591547..15591571 (25 bp)
GGCCAGTGCTCCAAGGTTCTTGTAT
LOC_Os02g26560
OsAffx.12207.1.S1_at--1073--6731Chr02:15591562..15591586 (25 bp)
GTTCTTGTATTATCATTTCCTGCCA
LOC_Os02g26560
OsAffx.12207.1.S1_at--209--631Chr02:15591671..15591695 (25 bp)
ATGCTGCTTCTCATTTTGCTGAGTC
LOC_Os02g26560
OsAffx.12207.1.S1_at--1058--1131Chr02:15591692..15591716 (25 bp)
AGTCCTTTACTCGAGATCCTGTCAG
LOC_Os02g26560
OsAffx.12207.1.S1_at--892--1251Chr02:15591810..15591834 (25 bp)
AGATTCGACACTTCATAGACTCATG
LOC_Os02g26560
OsAffx.12207.1.S1_at--1144--6551Chr02:15591841..15591865 (25 bp)
GATTCAGCAAGCCAGCTACTACATG
LOC_Os02g26560
OsAffx.12207.1.S1_at--607--671Chr02:15591863..15591887 (25 bp)
ATGACTTACGTCACAGCAAGGTTTA
LOC_Os02g26560
Target Sequence 
GACTCACTCAATTCAAGCTACAAGGAGCAGAAGCGAGTGGTGCGAAAGCATATTTTGCGGCCTGTGTCAGGTGCTTCACC
ATTTACAGTATGCAATAGCTGTTTCAATTTAGTTCAAATGCCATCAGATATCTACATATCCAAAACAAAGATGGGCAAAA
TGCAGTGCGGCCAGTGCTCCAAGGTTCTTGTATTATCATTTCCTGCCATACACCACGCGTGTGCAAATAGCAGTAAGGAG
GTAGCCTCAAAATCAAACAAGCACAAAGGCAGCATAGTCGTTAAGCCTGAGGATGCTGCTTCTCATTTTGCTGAGTCCTT
TACTCGAGATCCTGTCAGTATGAATGAAGAATATGGAGCATCTTTCACAAGAAGCTTCTCTACTCAAGCTGGATCAGCCC
TTGCTGCCTCACAAAGTGGCAAGAATGTTTCAGATTCGACACTTCATAGACTCATGGGATATGATTCAGCAAGCCAGCTA
CTACATGACTTACGTCACAGCAAGGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis