Browse Element(s) Details


OsAffx.2763.1.S1_at

Description tigr:9630.m02507
TID=OsAffx.2763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2660011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26560OsAffx.12207.1.S1_at11/112+15589114..15591960expressed protein
LOC_Os02g26570Os.21854.2.S1_x_at2/112+15603222..15605304hypothetical protein
LOC_Os02g26580NANA2+15606200..15606556hypothetical protein
LOC_Os02g26590NANA2+15607457..15607705hypothetical protein
LOC_Os02g26600OsAffx.2763.1.S1_at11/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.5.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.2.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26614OsAffx.12208.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614Os.8966.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.18542.1.S1_x_at2/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.30422.1.S1_x_at1/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26630NANA2+15628885..15632059transposon protein, putative, Mutator sub-class
LOC_Os02g26640OsAffx.12209.1.S1_at11/112+15632827..15633604hypothetical protein
LOC_Os02g26650Os.14546.1.S1_at11/112+15635410..156415067-dehydrocholesterol reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2763.1.S1_at--56--5091Chr02:15610100..15610124 (25 bp)
GCAGCCACAATGATCAGGCGTCTGT
LOC_Os02g26600
OsAffx.2763.1.S1_at--194--8811Chr02:15610078..15610102 (25 bp)
TGTTCCCTCACCGATGCCATGGTGG
LOC_Os02g26600
OsAffx.2763.1.S1_at--954--5831Chr02:15610049..15610073 (25 bp)
GACCATCATCGGTGAGCCGTGACGG
LOC_Os02g26600
OsAffx.2763.1.S1_at--955--6211Chr02:15610023..15610047 (25 bp)
GAGGCGCGAACTGAGCTGAATCCAA
LOC_Os02g26600
OsAffx.2763.1.S1_at--635--9171Chr02:15609994..15610018 (25 bp)
TGCCGGGCTACGCTTAAGCTTTGGC
LOC_Os02g26600
OsAffx.2763.1.S1_at--887--2691Chr02:15609979..15610003 (25 bp)
AAGCTTTGGCACACCGGGCGATCAT
LOC_Os02g26600
OsAffx.2763.1.S1_at--724--411Chr02:15609959..15609983 (25 bp)
ATCATGACCGGAGCGAGAGCGTCGA
LOC_Os02g26600
OsAffx.2763.1.S1_at--45--2591Chr02:15609932..15609956 (25 bp)
AACGTGGTGCCGACACTACACTGAG
LOC_Os02g26600
OsAffx.2763.1.S1_at--774--1911Chr02:15609873..15609897 (25 bp)
ACGTGGCAGGATACTCGTGGTCGCT
LOC_Os02g26600
OsAffx.2763.1.S1_at--1033--5451Chr02:15609802..15609826 (25 bp)
GAACGGATTGGATGCCACCGTCGAC
LOC_Os02g26600
OsAffx.2763.1.S1_at--354--4771Chr02:15609742..15609766 (25 bp)
GCTGCTGTCCGGTGATCTCAAGAGG
LOC_Os02g26600
Target Sequence 
GCAGCCACAATGATCAGGCGTCTGTTCCCTCACCGATGCCATGGTGGTGCAGACCATCATCGGTGAGCCGTGACGGCGAG
GCGCGAACTGAGCTGAATCCAAGCTCTGCCGGGCTACGCTTAAGCTTTGGCACACCGGGCGATCATGACCGGAGCGAGAG
CGTCGACGAACGTGGTGCCGACACTACACTGAGCCTCCTGCCTCCGGACTCGGCGGCGGCGGCGACGACGTGGCAGGATA
CTCGTGGTCGCTGGAGCGAGGGAGGAGGAGGAGGAGCAGACGGCGAGATGATGACAGTGAACGGATTGGATGCCACCGTC
GACGCGGTGAGCATCCGGCGGGTGTGGCTGGAGCAGCTGCTGCTGTCCGGTGATCTCAAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis