Browse Element(s) Details


OsAffx.12208.1.S1_at

Description tigr:9630.m02508
TID=OsAffx.12208.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2661410/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26560OsAffx.12207.1.S1_at11/112+15589114..15591960expressed protein
LOC_Os02g26570Os.21854.2.S1_x_at2/112+15603222..15605304hypothetical protein
LOC_Os02g26580NANA2+15606200..15606556hypothetical protein
LOC_Os02g26590NANA2+15607457..15607705hypothetical protein
LOC_Os02g26600OsAffx.2763.1.S1_at11/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.5.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.2.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26614OsAffx.12208.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614Os.8966.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.18542.1.S1_x_at2/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.30422.1.S1_x_at1/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26630NANA2+15628885..15632059transposon protein, putative, Mutator sub-class
LOC_Os02g26640OsAffx.12209.1.S1_at11/112+15632827..15633604hypothetical protein
LOC_Os02g26650Os.14546.1.S1_at11/112+15635410..156415067-dehydrocholesterol reductase, putative, expressed
LOC_Os02g26660Os.49306.1.S1_at11/112+15644370..15649639oligoribonuclease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12208.1.S1_at--599--7751Chr02:15616524..15616548 (25 bp)
GGTGCTCAAAAGAGGCTTGGAGACA
LOC_Os02g26614
OsAffx.12208.1.S1_at--223--7991Chr02:15616593..15616617 (25 bp)
GGATGAATCCTTACCTATGATAAAA
LOC_Os02g26614
OsAffx.12208.1.S1_at--526--7791NONE
GGTCCATTAAGGAAGATCTAGCTAA
NONE
OsAffx.12208.1.S1_at--160--271Chr02:15616957..15616981 (25 bp)
ATAGGAGTTAGTCTTGGATGTTCAA
LOC_Os02g26614
OsAffx.12208.1.S1_at--278--6211Chr02:15617026..15617050 (25 bp)
GAGGCTAGAGTGAAACTCTTCTTGA
LOC_Os02g26614
OsAffx.12208.1.S1_at--613--8051Chr02:15617098..15617122 (25 bp)
GGAGATGACAACTTTCAGGATGATT
LOC_Os02g26614
OsAffx.12208.1.S1_at--457--2431Chr02:15617158..15617182 (25 bp)
AACAATTCTGAACTGGATTGGGCAG
LOC_Os02g26614
OsAffx.12208.1.S1_at--422--8651Chr02:15617176..15617200 (25 bp)
TGGGCAGAATCTTTATTGTTACATT
LOC_Os02g26614
OsAffx.12208.1.S1_at--740--6771Chr02:15617193..15617217 (25 bp)
GTTACATTCACAATCTGGTGAGGGT
LOC_Os02g26614
OsAffx.12208.1.S1_at--728--3131Chr02:15617247..15617271 (25 bp)
AATTGTCAAGGTCACTCCTAGGGTG
LOC_Os02g26614
OsAffx.12208.1.S1_at--665--2031Chr02:15617409..15617433 (25 bp)
ACTATGAAGCACAATTTTTCTGTCA
LOC_Os02g26614
Target Sequence 
GGTGCTCAAAAGAGGCTTGGAGACAAGAGGAGAGAGTTCTAATAAGGAAATTATGGCTGTTGAAAGTAAGGATGAATCCT
TACCTATGATAAAAGTGGGACAAAACCAGCAAATGAGGTCCATTAAGGAAGATCTAGCTAATCTAATAGGAGTTAGTCTT
GGATGTTCAATTGAGGCGGTGGATACAAATATGAAATTGATAAATGACCTAGAGGAGGCTAGAGTGAAACTCTTCTTGAA
AGAACAACAAAAGGTAGGAAAAGATGAACCAATTGAAAATAAAAAAGGAGATGACAACTTTCAGGATGATTTATTTAACT
TTCTTGATGAAACAGACTGTGAAAGCAACAATTCTGAACTGGATTGGGCAGAATCTTTATTGTTACATTCACAATCTGGT
GAGGGTAAAAAGAAAAACAAGAAAGGAAACCTTGCAATTGTCAAGGTCACTCCTAGGGTGAACAAAAGGAAACCAGGGAA
AAATACCAAAAAGAAAAAAATGAAAGGAATCATATGGAATATCAGAGGAAACTATGAAGCACAATTTTTCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis