Browse Element(s) Details


OsAffx.18542.1.S1_x_at

Description gb:NM_197311.1
DB_XREF= gi:37535981
TID=OsAffx.18542.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0055O03.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g033705/11transposon protein, putative, unclassified
LOC_Os02g266142/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03330OsAffx.26711.2.S1_at10/115+1337065..1339039hypothetical protein
LOC_Os05g03339NANA5+1343431..1343643hypothetical protein
LOC_Os05g03350NANA5+1353872..1355110retrotransposon protein, putative, unclassified
LOC_Os05g03360NANA5+1355741..1361890retrotransposon protein, putative, unclassified
LOC_Os05g03370Os.20602.2.S1_x_at11/115+1363116..1366692transposon protein, putative, unclassified
LOC_Os05g03370OsAffx.18542.1.S1_x_at5/115+1363116..1366692transposon protein, putative, unclassified
LOC_Os05g03380NANA5+1374390..1374740hypothetical protein
LOC_Os05g03390Os.23340.1.S1_at11/115+1375331..1380822expressed protein
LOC_Os05g03400Os.51646.1.S1_at11/115+1388150..1390874expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18542.1.S1_x_at--165--4791Chr10:19369092..19369113 (22 bp)
GCTCCAAGCGTCTCCGGTGATGAGG
NONE
OsAffx.18542.1.S1_x_at--1057--4011Chr04:16559023..16559195 (25 bp)
CGTCTCCGGTGATGAGGTGGCCAAA
NONE
OsAffx.18542.1.S1_x_at--756--9491Chr04:16559021..16559193 (25 bp)
TCTCCGGTGATGAGGTGGCCAAATG
NONE
OsAffx.18542.1.S1_x_at--884--61132Chr12:26646851..26646875 (25 bp)
GAGGTGGCCAAATGGGCCGGGCCAA
NONE
OsAffx.18542.1.S1_x_at--1016--50941Chr12:10715855..10715879 (25 bp)
GCACGGCCGAACCTGTAGCAGGCAC
NONE
OsAffx.18542.1.S1_x_at--461--19540Chr12:10715857..10715881 (25 bp)
ACGGCCGAACCTGTAGCAGGCACGG
NONE
OsAffx.18542.1.S1_x_at--761--40948Chr12:10715862..10715886 (25 bp)
CGAACCTGTAGCAGGCACGGCCCGG
NONE
OsAffx.18542.1.S1_x_at--976--82368Chr12:26646920..26646944 (25 bp)
GGCACGGCCTGCTACAGTAACGGGC
NONE
OsAffx.18542.1.S1_x_at--751--41769Chr12:26646927..26646951 (25 bp)
CCTGCTACAGTAACGGGCCGTGCCG
NONE
OsAffx.18542.1.S1_x_at--971--33331Chr12:23679573..23679597 (25 bp)
CACGGCTACTGTAGCGGGCCGGCAC
NONE
OsAffx.18542.1.S1_x_at--642--83519Chr12:23679633..23679657 (25 bp)
GGCGGCCCGTCAGGCGCGGACAGGG
NONE
Target Sequence 
GCTCCAAGCGTCTCCGGTGATGAGGTGGCCAAATGGGCCGGGCCAAACGGGCGGCCCGGGGCACGGCCGAACCTGTAGCA
GGCACGGCCCGGCACGGCCTGCTACAGTAACGGGCCGTGCCGGCACGGCACGAGTAGCCGTGCCGTGCTTGGGCCGCTGG
CCGAGCCCGCGGGCCGGCACGGCACGGCACGGCTACTGTAGCGGGCCGGCACGGCACGGCCCGCGGCACGGCACGGCACG
GCACGCCGGCGGCCCGTCAGGCGCGGACAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18542.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis