Browse Element(s) Details


Os.21854.2.S1_x_at

Description gb:AK066173.1
DB_XREF= gi:32976191
TID=Os.21854.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055M08, full insert sequence.
FL= gb:AK066173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2884011/11expressed protein
LOC_Os02g265702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28820Os.50200.1.S1_at3/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.50821.1.S1_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.27061.2.A1_x_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28830Os.51559.1.A1_at11/116+16428492..16431428expressed protein
LOC_Os06g28830OsAffx.4957.1.S1_s_at11/116+16428492..16431428expressed protein
LOC_Os06g28830OsAffx.4957.1.S1_at9/116+16428492..16431428expressed protein
LOC_Os06g28840Os.21854.2.S1_x_at11/116+16439867..16443416expressed protein
LOC_Os06g28840Os.21854.2.S1_at11/116+16439867..16443416expressed protein
LOC_Os06g28850OsAffx.15648.1.S1_at1/116+16446516..16449850Transposable element protein, putative, Retrotrans_gag
LOC_Os06g28860OsAffx.5142.1.S1_x_at1/116+16450828..16452587hypothetical protein
LOC_Os06g28860Os.53842.2.S1_x_at1/116+16450828..16452587hypothetical protein
LOC_Os06g28870OsAffx.4958.1.S1_at11/116+16460788..16461818hypothetical protein
LOC_Os06g28870OsAffx.14940.1.S1_x_at1/116+16460788..16461818hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21854.2.S1_x_at--1066--5931Chr06:16440422..16440446 (25 bp)
GAGCACATTTCTGACAATTTCCTTA
LOC_Os06g28840
Os.21854.2.S1_x_at--460--7752Chr06:16440385..16440409 (25 bp)
GGTGTTCAGTTCCTATCAAGAATCT
LOC_Os06g28840
Os.21854.2.S1_x_at--582--9511Chr06:16440363..16440387 (25 bp)
TCTACATAAACAGTGGGACCCCGGT
LOC_Os06g28840
Os.21854.2.S1_x_at--1000--7711Chr06:16440341..16440365 (25 bp)
GGTGGCTCTGGTGAAACTTTGCATC
LOC_Os06g28840
Os.21854.2.S1_x_at--419--2293Chr06:16442673..16442697 (25 bp)
AAATGGGCTGCCTGTGGGCTGTCAA
LOC_Os06g28840
Os.21854.2.S1_x_at--953--7574Chr06:16442658..16442682 (25 bp)
GGGCTGTCAACCACTTTCAAAGCAA
LOC_Os06g28840
Os.21854.2.S1_x_at--423--6951Chr06:16440042..16440066 (25 bp)
GTAGAACCTACTAGCCTTTGTATCC
LOC_Os06g28840
Os.21854.2.S1_x_at--31--7851Chr06:16439951..16439975 (25 bp)
GGTACTCCTACTCCTAAAATTGCAT
LOC_Os06g28840
Os.21854.2.S1_x_at--497--1931Chr06:16439907..16439931 (25 bp)
ACTGGAATAAGTCAGGTATGCAACC
LOC_Os06g28840
Os.21854.2.S1_x_at--271--7851Chr06:16439893..16439917 (25 bp)
GGTATGCAACCTTTTGATTAGTAAG
LOC_Os06g28840
Os.21854.2.S1_x_at--56--6871Chr06:16439869..16439893 (25 bp)
GTTTGTTAATGCACACGCAGTCACT
LOC_Os06g28840
Target Sequence 
GAGCACATTTCTGACAATTTCCTTAATGTTATCATGTGGTGTTCAGTTCCTATCAAGAATCTACATAAACAGTGGGACCC
CGGTGGCTCTGGTGAAACTTTGCATCGGCTTGGGGACAAGCCGAAATTTAAGGAGAGGAGATTGTTAGGAACCCAAATGG
GCTGCCTGTGGGCTGTCAACCACTTTCAAAGCAAGGCCCAAGCAAGCAAATCAGGAGCACATATAAACAGCAGGAGCAGC
ACCAGAGAGGAGATCGAACAGAGAACAACAGAACCGGTTGAGGGGCTTCTCGGCGGCGACGGCGGCGGCGGCGACCTGGA
ACCGGGCTTGGTTCCTTGTCGATCTTTACTCTCCCTCTTCTTCTACTTGTCTAGAAGCTAGTAGAACCTACTAGCCTTTG
TATCCTTCCATTTTCCACCTCAAAACCCCTCCACTATTGTAACAGACTCGGTTGTTCCTTGTGTTGGATTTGGTACTCCT
ACTCCTAAAATTGCATTGTTGAGTGGGTCTCTAACACTGGAATAAGTCAGGTATGCAACCTTTTGATTAGTAAGTTTGTT
AATGCACACGCAGTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21854.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis