Browse Element(s) Details


Os.50200.1.S1_at

Description gb:AK120065.1
DB_XREF= gi:37989688
TID=Os.50200.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002B12, full insert sequence.
FL= gb:AK120065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g288203/11squalene/oxidosqualene cyclases family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28770OsAffx.27856.1.S1_at11/116+16384567..16386436hypothetical protein
LOC_Os06g28780NANA6+16389087..16391530retrotransposon protein, putative, LINE subclass
LOC_Os06g28790OsAffx.27857.1.S1_at11/116+16395084..16395893hypothetical protein
LOC_Os06g28800OsAffx.15651.1.S1_at11/116+16396166..16397754hypothetical protein
LOC_Os06g28810Os.46012.2.S1_x_at6/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.46012.3.S1_x_at4/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.46012.3.S1_at4/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.27088.1.A1_x_at3/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28820Os.50200.1.S1_at3/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.50821.1.S1_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.27061.2.A1_x_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28830Os.51559.1.A1_at11/116+16428492..16431428expressed protein
LOC_Os06g28830OsAffx.4957.1.S1_s_at11/116+16428492..16431428expressed protein
LOC_Os06g28830OsAffx.4957.1.S1_at9/116+16428492..16431428expressed protein
LOC_Os06g28840Os.21854.2.S1_x_at11/116+16439867..16443416expressed protein
LOC_Os06g28840Os.21854.2.S1_at11/116+16439867..16443416expressed protein
LOC_Os06g28850OsAffx.15648.1.S1_at1/116+16446516..16449850Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50200.1.S1_at--235--8311Chr06:16409366..16409390 (25 bp)
GGCTAGTAGACCTCATGCAGTGAAC
LOC_Os06g28820
Os.50200.1.S1_at--232--7431Chr06:16409235..16409259 (25 bp)
GTGTTATTTCATGTCTCACTGATAA
LOC_Os06g28820
Os.50200.1.S1_at--258--591Chr06:16409196..16409220 (25 bp)
ATCCAACACCACTATATCATGCAGC
LOC_Os06g28820
Os.50200.1.S1_at--66--4791Chr06:16400011..16400035 (25 bp)
GCTCCTTTTCTTTCAATTATAGCAA
NONE
Os.50200.1.S1_at--372--10151Chr06:16399985..16400009 (25 bp)
TATCGTAATTTGTTCCCTATTTGGG
NONE
Os.50200.1.S1_at--255--6831Chr06:16399950..16399974 (25 bp)
GTTTCACCGCCGATTGGTTCTAAGA
NONE
Os.50200.1.S1_at--578--6551Chr06:16399899..16399923 (25 bp)
GATTATTTGCCGATCTTATACCCAA
NONE
Os.50200.1.S1_at--447--2371Chr06:16399819..16399843 (25 bp)
AAACTACTACTAAAACGCATGATCG
NONE
Os.50200.1.S1_at--115--7011Chr06:16399767..16399791 (25 bp)
GTACTGTTATCTAATGGCATGTCAA
NONE
Os.50200.1.S1_at--904--3571Chr06:16399721..16399745 (25 bp)
CATTTTTTATTCACCTACCATTCAC
NONE
Os.50200.1.S1_at--300--10511Chr06:16399701..16399725 (25 bp)
TTCACACACTGATCCCAAAACGACT
NONE
Target Sequence 
GGCTAGTAGACCTCATGCAGTGAACACTGCTTGGGCAATGTTAGCTTTAATATATGCTGGGCAGGTTTGTTTTGTTCATT
ATTCATTTTAGTAGGTACTAATAGTCTATTATATTATTTATGGACTACCATGTGTTATTTCATGTCTCACTGATAAGCAG
GTTGAAATAGATCCAACACCACTATATCATGCAGCACAAGAATTGATCAATATGCAACTAGAAACAGGCGAGTTTCCACA
ACAAGAACATGTTGGATGCTTCAACTGCTCCTTTTCTTTCAATTATAGCAATTATCGTAATTTGTTCCCTATTTGGGCTC
TTGGGGAGTTTCACCGCCGATTGGTTCTAAGAAAGAGCTGAACCTGATGAAATGAGATGATTATTTGCCGATCTTATACC
CAAAAGTTTCAGAAGAAAAATATCACATACAACCTGAATTGTTGTAATAAATATAGCGAAACTACTACTAAAACGCATGA
TCGTTGTAATTCCAAATGAAACTGTACTTTGTACTGTTATCTAATGGCATGTCAATAAATACTACTCATGTATCAACATT
TTTTATTCACCTACCATTCACACACTGATCCCAAAACGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis