Browse Element(s) Details


Os.51559.1.A1_at

Description gb:AK063066.1
DB_XREF= gi:32973084
TID=Os.51559.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51559 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G07, full insert sequence.
FL= gb:AK063066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2883011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28810Os.46012.2.S1_x_at6/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.46012.3.S1_x_at4/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.46012.3.S1_at4/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.27088.1.A1_x_at3/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28820Os.50200.1.S1_at3/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.50821.1.S1_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.27061.2.A1_x_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28830Os.51559.1.A1_at11/116+16428492..16431428expressed protein
LOC_Os06g28830OsAffx.4957.1.S1_s_at11/116+16428492..16431428expressed protein
LOC_Os06g28830OsAffx.4957.1.S1_at9/116+16428492..16431428expressed protein
LOC_Os06g28840Os.21854.2.S1_x_at11/116+16439867..16443416expressed protein
LOC_Os06g28840Os.21854.2.S1_at11/116+16439867..16443416expressed protein
LOC_Os06g28850OsAffx.15648.1.S1_at1/116+16446516..16449850Transposable element protein, putative, Retrotrans_gag
LOC_Os06g28860OsAffx.5142.1.S1_x_at1/116+16450828..16452587hypothetical protein
LOC_Os06g28860Os.53842.2.S1_x_at1/116+16450828..16452587hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51559.1.A1_at--646--291Chr06:16428960..16428984 (25 bp)
ATAAACATGGGACAAGCATCTTGCA
LOC_Os06g28830
Os.51559.1.A1_at--89--2091Chr06:16428931..16428955 (25 bp)
ACATATGCTCATGACTCTACCGGTT
LOC_Os06g28830
Os.51559.1.A1_at--1072--2831Chr06:16428865..16428889 (25 bp)
AAGTACAATAATCCTCATGAGCCAG
LOC_Os06g28830
Os.51559.1.A1_at--837--9611Chr06:16428851..16428875 (25 bp)
TCATGAGCCAGCGATACGGACTCCA
LOC_Os06g28830
Os.51559.1.A1_at--600--1931Chr06:16428836..16428860 (25 bp)
ACGGACTCCACGTAGATTCCAGAGG
LOC_Os06g28830
Os.51559.1.A1_at--185--7011Chr06:16428750..16428774 (25 bp)
GTACACTACTCCCAATGTTCCGTTG
LOC_Os06g28830
Os.51559.1.A1_at--422--6691Chr06:16428734..16428758 (25 bp)
GTTCCGTTGCTTCAATTACAGCATT
LOC_Os06g28830
Os.51559.1.A1_at--711--2131Chr06:16428653..16428677 (25 bp)
ACAGTCCATTATTGTCATGATTAGC
LOC_Os06g28830
Os.51559.1.A1_at--629--6551Chr06:16428635..16428659 (25 bp)
GATTAGCTTTTGTAATTGGCTGTAG
LOC_Os06g28830
Os.51559.1.A1_at--566--7491Chr06:16428601..16428625 (25 bp)
GTGGTTATTTTGCAGCCAACAGCGA
LOC_Os06g28830
Os.51559.1.A1_at--456--1651Chr06:16428581..16428605 (25 bp)
AGCGAGCTGTACTGTTAGCCTTGCT
LOC_Os06g28830
Target Sequence 
ATAAACATGGGACAAGCATCTTGCAATAAACATATGCTCATGACTCTACCGGTTCCCNCCACTGAAATACTCCATCCGTT
CTATAATATAAGAGCAAGTACAATAATCCTCATGAGCCAGCGATACGGACTCCACGTAGATTCCAGAGGGAGCTGGAGGG
ATAAAGGGAAGAGAAAGATAGCAGGTTGGCGANTAATTTGCAGCCCGGCTGTACACTACTCCCAATGTTCCGTTGCTTCA
ATTACAGCATTCAATTGAAGATTAGAAAAATCAAAGCTAGCTATGGGAAGTGTGTAGAGATGTATATACAGTCCATTATT
GTCATGATTAGCTTTTGTAATTGGCTGTAGTAGGATGATGTGGTTATTTTGCAGCCAACAGCGAGCTGTACTGTTAGCCT
TGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51559.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis