Browse Element(s) Details


OsAffx.27856.1.S1_at

Description tigr:9634.m02752
TID=OsAffx.27856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2877011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28740Os.21650.1.S1_at9/116+16362087..16365456expressed protein
LOC_Os06g28740Os.55477.1.S1_at3/116+16362087..16365456expressed protein
LOC_Os06g28740Os.52687.1.A1_at1/116+16362087..16365456expressed protein
LOC_Os06g28750OsAffx.32334.1.S1_s_at7/116+16370400..16377341retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28750OsAffx.32334.1.S1_x_at4/116+16370400..16377341retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28760OsAffx.15650.1.S1_at11/116+16380272..16381992hypothetical protein
LOC_Os06g28770OsAffx.27856.1.S1_at11/116+16384567..16386436hypothetical protein
LOC_Os06g28780NANA6+16389087..16391530retrotransposon protein, putative, LINE subclass
LOC_Os06g28790OsAffx.27857.1.S1_at11/116+16395084..16395893hypothetical protein
LOC_Os06g28800OsAffx.15651.1.S1_at11/116+16396166..16397754hypothetical protein
LOC_Os06g28810Os.46012.2.S1_x_at6/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.46012.3.S1_x_at4/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.46012.3.S1_at4/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.27088.1.A1_x_at3/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28820Os.50200.1.S1_at3/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.50821.1.S1_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.27061.2.A1_x_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27856.1.S1_at--886--3351Chr06:16385805..16385829 (25 bp)
CACGCGCTGCGCATTGTTGAAGTAG
LOC_Os06g28770
OsAffx.27856.1.S1_at--832--1531Chr06:16385781..16385801 (21 bp)
AGCATGTTGACGACAGCGCGGTTCT
LOC_Os06g28770
OsAffx.27856.1.S1_at--1008--4151Chr06:16385501..16385525 (25 bp)
CGCCATCGTCGGTGAAGGTGATCCA
LOC_Os06g28770
OsAffx.27856.1.S1_at--412--7451Chr06:16385465..16385489 (25 bp)
GTGTAATATGATTCCCCTGGTCGTT
LOC_Os06g28770
OsAffx.27856.1.S1_at--450--6291Chr06:16385438..16385461 (24 bp)
GATGATCTCGACAATGCCGTTCCGA
LOC_Os06g28770
OsAffx.27856.1.S1_at--876--7471Chr06:16384936..16384960 (25 bp)
GTGTGTCCGCGATAGTCAGATTGTC
LOC_Os06g28770
OsAffx.27856.1.S1_at--1160--5271Chr06:16384898..16384922 (25 bp)
GAATGTTCGTCTTCCAGCATCTGAT
LOC_Os06g28770
OsAffx.27856.1.S1_at--830--5251Chr06:16384833..16384857 (25 bp)
GAATCCTCCACGGATGATGCAGCTG
LOC_Os06g28770
OsAffx.27856.1.S1_at--1138--1531Chr06:16384807..16384831 (25 bp)
AGCATACACCCTGGTAGGCATCGAA
LOC_Os06g28770
OsAffx.27856.1.S1_at--1024--1291Chr06:16384706..16384730 (25 bp)
AGATGATGCAGTCGCCTGGGAATCT
LOC_Os06g28770
OsAffx.27856.1.S1_at--31--3211Chr06:16384658..16384682 (25 bp)
CAATGGACTGTACGGCCGATTATAG
LOC_Os06g28770
Target Sequence 
CACGCGCTGCGCATTGTTGAAGTAGGCCAGCATGTTGACGACAGCGCGGTTCTTGGCGGCCTCGCCGATGAGCCGCTCGC
CATCGTCGGTGAAGGTGATCCACCACCACCAAGGTGTAATATGATTCCCCTGGTCGTTGGCGATGATCTCGACAATGCCG
TTCCGAAGCGCGACGCGCGCTTCACCAATCGGCGATGGTGTGTCCGCGATAGTCAGATTGTCATCGGAGGAGCAGGAATG
TTCGTCTTCCAGCATCTGATCGCAACCCAATCGCCGGCAACTGCAGCTGTCATGGCAGGAGAATCCTCCACGGATGATGC
AGCTGCAGCATACACCCTGGTAGGCATCGAACCCAGACCTGCACATGTGGCCGACGCAGTCACCGGGGATCGTGGAGCCG
ACGAGGAGCAGTCACCGGGAATTGTGGAGATGATGCAGTCGCCTGGGAATCTGGGATCGTGGATTACTGGCAATCCAATG
GACTGTACGGCCGATTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis