Browse Element(s) Details

Os.55477.1.S1_at

Description

gb:AK108156.1
DB_XREF= gi:32993365
TID=Os.55477.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G07, full insert sequence.
FL= gb:AK108156.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g28740	3/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g28690	OsAffx.27854.2.S1_at	10/11	6	+	16338517..16339770	hypothetical protein
LOC_Os06g28700	NA	NA	6	+	16341336..16341614	hypothetical protein
LOC_Os06g28710	OsAffx.26327.1.S1_at	11/11	6	+	16344531..16347893	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710	Os.15412.1.S1_x_at	9/11	6	+	16344531..16347893	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710	OsAffx.26327.1.S1_s_at	9/11	6	+	16344531..16347893	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28720	OsAffx.4956.1.S1_at	11/11	6	+	16351390..16352259	expressed protein
LOC_Os06g28730	Os.40388.2.S1_s_at	11/11	6	+	16352729..16353523	hypothetical protein
LOC_Os06g28740	Os.21650.1.S1_at	9/11	6	+	16362087..16365456	expressed protein
LOC_Os06g28740	Os.55477.1.S1_at	3/11	6	+	16362087..16365456	expressed protein
LOC_Os06g28740	Os.52687.1.A1_at	1/11	6	+	16362087..16365456	expressed protein
LOC_Os06g28750	OsAffx.32334.1.S1_s_at	7/11	6	+	16370400..16377341	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28750	OsAffx.32334.1.S1_x_at	4/11	6	+	16370400..16377341	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28760	OsAffx.15650.1.S1_at	11/11	6	+	16380272..16381992	hypothetical protein
LOC_Os06g28770	OsAffx.27856.1.S1_at	11/11	6	+	16384567..16386436	hypothetical protein
LOC_Os06g28780	NA	NA	6	+	16389087..16391530	retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55477.1.S1_at--862--463	1	Chr06:16364541..16364565 (25 bp)	GCGTCAATTCGTGCAGCTGTTGCAT	LOC_Os06g28740
Os.55477.1.S1_at--510--161	1	Chr06:16364527..16364551 (25 bp)	AGCTGTTGCATGAAGGCCGTCCAGT	LOC_Os06g28740
Os.55477.1.S1_at--386--979	1	NONE	TAACAAACCATCTTTAGGACGTTCG	NONE
Os.55477.1.S1_at--176--1007	1	NONE	TAGGACGTTCGTTCCGCCTATACTA	NONE
Os.55477.1.S1_at--591--445	1	NONE	GCCTATACTAGAACGCTCCTGTTAA	NONE
Os.55477.1.S1_at--475--545	1	NONE	GAACGCTCCTGTTAAAAGCTTGTCT	NONE
Os.55477.1.S1_at--610--271	1	NONE	AAGCTTGTCTGTATGTGCCTATGTG	NONE
Os.55477.1.S1_at--301--919	1	NONE	TGCCTATGTGGCATTACCGTAAAAT	NONE
Os.55477.1.S1_at--986--63	1	Chr06:16362392..16362412 (21 bp)	ATGCTTGCTAATCGGTTCTCAATGA	LOC_Os06g28740
Os.55477.1.S1_at--1007--789	1	NONE	GGTTCTCAATGAAAGATGGCCAGGC	NONE
Os.55477.1.S1_at--272--623	1	NONE	GATGGCCAGGCAACTATCGATCTCC	NONE

Target Sequence

GCGTCAATTCGTGCAGCTGTTGCATGAAGGCCGTCCAGTAGTTGTTGCCTTTACCATTAAGTGCACTTATACTCATCACC
TTGACAAGGTACTGGAGGAGGCTGCTGCTACATTTCATCCACACGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCC
GGATTTTGCCTCACGAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGAACAGGCTGCTAGCCCAGG
AAAGGCGGTGGACCCTAATGTCACAAAGTACTCAGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCGTGTATGGATTCC
GGGAATACTTTAAGAAGCACGGATTCAAGTATTTTGAAACAAATTAGATCAACTATTGAAAATCGTTGTGATGAAACATG
ATACTAGTTAACAAACCATCTTTAGGACGTTCGTTCCGCCTATACTAGAACGCTCCTGTTAAAAGCTTGTCTGTATGTGC
CTATGTGGCATTACCGTAAAATGCTTGCTAATCGGTTCTCAATGAAAGATGGCCAGGCAACTATCGATCTCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis