Browse Element(s) Details


Os.21650.1.S1_at

Description gb:AK119703.1
DB_XREF= gi:37989326
TID=Os.21650.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-157-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-D11, full insert sequence.
FL= gb:AK119703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g287409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28690OsAffx.27854.2.S1_at10/116+16338517..16339770hypothetical protein
LOC_Os06g28700NANA6+16341336..16341614hypothetical protein
LOC_Os06g28710OsAffx.26327.1.S1_at11/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710Os.15412.1.S1_x_at9/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710OsAffx.26327.1.S1_s_at9/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28720OsAffx.4956.1.S1_at11/116+16351390..16352259expressed protein
LOC_Os06g28730Os.40388.2.S1_s_at11/116+16352729..16353523hypothetical protein
LOC_Os06g28740Os.21650.1.S1_at9/116+16362087..16365456expressed protein
LOC_Os06g28740Os.55477.1.S1_at3/116+16362087..16365456expressed protein
LOC_Os06g28740Os.52687.1.A1_at1/116+16362087..16365456expressed protein
LOC_Os06g28750OsAffx.32334.1.S1_s_at7/116+16370400..16377341retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28750OsAffx.32334.1.S1_x_at4/116+16370400..16377341retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28760OsAffx.15650.1.S1_at11/116+16380272..16381992hypothetical protein
LOC_Os06g28770OsAffx.27856.1.S1_at11/116+16384567..16386436hypothetical protein
LOC_Os06g28780NANA6+16389087..16391530retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21650.1.S1_at--160--5271Chr06:16362456..16362480 (25 bp)
GAATGCACGTTCAGCCTGTACTAGA
LOC_Os06g28740
Os.21650.1.S1_at--359--6751Chr06:16362423..16362447 (25 bp)
GTTCAAAGCCTTTCTGTATGTGGCA
LOC_Os06g28740
Os.21650.1.S1_at--917--9611Chr06:16362370..16362394 (25 bp)
TCATGGCAGCTATCGGTCTCCGTTG
LOC_Os06g28740
Os.21650.1.S1_at--438--491Chr06:16362359..16362383 (25 bp)
ATCGGTCTCCGTTGTGCTAAGATAC
LOC_Os06g28740
Os.21650.1.S1_at--46--6511Chr06:16362326..16362350 (25 bp)
GATAGGTCTTATTATGCTGCATGCC
LOC_Os06g28740
Os.21650.1.S1_at--208--4771Chr06:16362311..16362335 (25 bp)
GCTGCATGCCTTTTTTGTGAGTAAT
LOC_Os06g28740
Os.21650.1.S1_at--371--7071Chr06:16362291..16362315 (25 bp)
GTAATGACTAGACTTTCAGATTCAG
LOC_Os06g28740
Os.21650.1.S1_at--960--10431Chr06:16362250..16362274 (25 bp)
TTATGGCTTAGCATGCCTCAACCTT
LOC_Os06g28740
Os.21650.1.S1_at--652--8171Chr06:16362199..16362223 (25 bp)
GGAAGCCGCCGAAGTTTTAACATAT
LOC_Os06g28740
Os.21650.1.S1_at--293--10451NONE
TTAGTCATGAAACAATGGCCACTGG
NONE
Os.21650.1.S1_at--624--8451NONE
TGGCCACTGGTTATACCATCGGATT
NONE
Target Sequence 
GAATGCACGTTCAGCCTGTACTAGAATACTTTTGTTCAAAGCCTTTCTGTATGTGGCATTATCTTAAAATGCTTGCTAAT
CGGNTCTCATGGCAGCTATCGGTCTCCGTTGTGCTAAGATACTGTGACAGGATAGGTCTTATTATGCTGCATGCCTTTTT
TGTGAGTAATGACTAGACTTTCAGATTCAGNTGTAAATTCAATGACTTATGGCTTAGCATGCCTCAACCTTCTACATNCC
TTTGNTGTANGGTGCAGGGAAGCCGCCGAAGTTTTAACATATTGCTGATTGNACCCGGAGATTAGTCATGAAACAATGGC
CACTGGTTATACCATCGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis