Browse Element(s) Details


OsAffx.27857.1.S1_at

Description tigr:9634.m02754
TID=OsAffx.27857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2879011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28750OsAffx.32334.1.S1_s_at7/116+16370400..16377341retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28750OsAffx.32334.1.S1_x_at4/116+16370400..16377341retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28760OsAffx.15650.1.S1_at11/116+16380272..16381992hypothetical protein
LOC_Os06g28770OsAffx.27856.1.S1_at11/116+16384567..16386436hypothetical protein
LOC_Os06g28780NANA6+16389087..16391530retrotransposon protein, putative, LINE subclass
LOC_Os06g28790OsAffx.27857.1.S1_at11/116+16395084..16395893hypothetical protein
LOC_Os06g28800OsAffx.15651.1.S1_at11/116+16396166..16397754hypothetical protein
LOC_Os06g28810Os.46012.2.S1_x_at6/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.46012.3.S1_x_at4/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.46012.3.S1_at4/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.27088.1.A1_x_at3/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28820Os.50200.1.S1_at3/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.50821.1.S1_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.27061.2.A1_x_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27857.1.S1_at--299--10371Chr06:16395647..16395671 (25 bp)
TTTTTCATCACATGTGCCAGCCAGA
LOC_Os06g28790
OsAffx.27857.1.S1_at--646--2851Chr06:16395581..16395605 (25 bp)
AAGTCTGGGCGAGTCTATCTCTTCC
LOC_Os06g28790
OsAffx.27857.1.S1_at--1015--2731Chr06:16395547..16395571 (25 bp)
AAGAAGGCTTGCATGGTGTCCCGGC
LOC_Os06g28790
OsAffx.27857.1.S1_at--412--7251Chr06:16395530..16395554 (25 bp)
GTCCCGGCGTGTTTCAGATTCAGAG
LOC_Os06g28790
OsAffx.27857.1.S1_at--773--5571Chr06:16395436..16395460 (25 bp)
GAAAGTGCTCCGTTCATTATGTTGA
LOC_Os06g28790
OsAffx.27857.1.S1_at--460--8791Chr06:16395417..16395441 (25 bp)
TGTTGAAGAGTATTCCCACCGCAGG
LOC_Os06g28790
OsAffx.27857.1.S1_at--738--5691Chr06:16395374..16395398 (25 bp)
GACTTATGGATTTGGACTGACGCTC
LOC_Os06g28790
OsAffx.27857.1.S1_at--567--3651Chr06:16395324..16395348 (25 bp)
CTTCTCTCTCACCAATGCTGATGAA
LOC_Os06g28790
OsAffx.27857.1.S1_at--706--3911Chr06:16395188..16395212 (25 bp)
CTGGAAGACCTTCACTGCAAGCTTG
LOC_Os06g28790
OsAffx.27857.1.S1_at--324--10711Chr06:16395166..16395190 (25 bp)
TTGCCCGTGCGTACGACTATCAGTA
LOC_Os06g28790
OsAffx.27857.1.S1_at--1115--2791Chr06:16395133..16395157 (25 bp)
AAGATGATGGTGTTCGCTTCCGGGA
LOC_Os06g28790
Target Sequence 
TTTTTCATCACATGTGCCAGCCAGAGTGACAGGGATGCCATCCTGAGGCAGCCACGGCTTGCCACCAAGTCTGGGCGAGT
CTATCTCTTCCGCCCGTGGGAAGAAGGCTTGCATGGTGTCCCGGCGTGTTTCAGATTCAGAGCTCGAGTATGCATTGAGG
GGCTCCCAATGCATGCCCGTACAGATGAAGCAGTAGCCAAGATCATTGGAAGAAAGTGCTCCGTTCATTATGTTGAAGAG
TATTCCCACCGCAGGAACTACAACCGCACTTTTGACTTATGGATTTGGACTGACGCTCCAAAATTCATCCCGCGATCTTC
GAGCTTCTCTCTCACCAATGCTGATGAAGAAGGTCTGCCCATAGACATCCCCCTTCCGGACCTGGAACCGCACCACAATC
CGCCGCCAGAGGAGCCAAAGGAGGGGTGGACTTACAATGTCCTGATTCATATTGACACCCTGGAAGACCTTCACTGCAAG
CTTGCCCGTGCGTACGACTATCAGTACGGTGCTGAAGATGATGGTGTTCGCTTCCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis