Browse Element(s) Details


Os.49735.2.S1_at

Description gb:AK111725.1
DB_XREF= gi:37988388
TID=Os.49735.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031P19, full insert sequence.
FL= gb:AK111725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0399010/11Glutamate-rich WD repeat-containing protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03950Os.47463.1.S1_x_at6/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03950Os.14491.2.S1_x_at4/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03960OsAffx.13097.1.S1_s_at11/1111+1591314..1599431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03960Os.27037.1.A1_at1/1111+1591314..1599431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03970Os.10274.4.S1_at11/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03970Os.10274.1.S1_a_at10/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03970OsAffx.31568.1.S1_at5/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03980OsAffx.31569.1.S1_x_at4/1111+1608336..1609068Calmodulin-6, putative
LOC_Os11g03990Os.49735.2.S1_at10/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g03990Os.49735.1.S1_x_at8/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g03990OsAffx.31569.1.S1_x_at1/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g04000NANA11+1614764..1616642expressed protein
LOC_Os11g04010Os.7189.1.S1_at10/1111+1615991..1617301latex-abundant protein, putative, expressed
LOC_Os11g04020Os.18707.1.S1_at10/1111+1617495..1622979major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04030Os.6142.1.S1_s_at11/1111+1625486..1630412major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04040NANA11+1633652..1635917retrotransposon protein, putative, unclassified
LOC_Os11g04050NANA11+1638660..1638989hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006625biological_processprotein targeting to peroxisome
GO:0009826biological_processunidimensional cell growth
GO:0009908biological_processflower development
GO:0009965biological_processleaf morphogenesis
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0005053molecular_functionperoxisome targeting signal-2 binding
GO:0005515molecular_functionprotein binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49735.2.S1_at--438--6531Chr11:1610201..1610225 (25 bp)
GATTTCTACAGAAGCACTGTTCATC
LOC_Os11g03990
Os.49735.2.S1_at--99--1491Chr11:1610189..1610213 (25 bp)
AGCACTGTTCATCTGAATCAAGGTT
LOC_Os11g03990
Os.49735.2.S1_at--87--9731Chr11:1610172..1610196 (25 bp)
TCAAGGTTTCATGGATTAATTTTTT
LOC_Os11g03990
Os.49735.2.S1_at--732--6291Chr11:1609997..1610021 (25 bp)
GATGATATGTTATATTCTGTACAAG
LOC_Os11g03990
Os.49735.2.S1_at--208--8831Chr11:1609962..1609986 (25 bp)
TGATTGTGTATCTCTGTGCTTGCAT
LOC_Os11g03990
Os.49735.2.S1_at--84--6911Chr11:1609955..1609979 (25 bp)
GTATCTCTGTGCTTGCATTAGTTAA
LOC_Os11g03990
Os.49735.2.S1_at--961--9991Chr11:1609937..1609961 (25 bp)
TAGTTAATATTCACCTCGACCGTTT
LOC_Os11g03990
Os.49735.2.S1_at--329--10211Chr11:1609930..1609954 (25 bp)
TATTCACCTCGACCGTTTGTATATT
LOC_Os11g03990
Os.49735.2.S1_at--1072--4011Chr11:1609921..1609945 (25 bp)
CGACCGTTTGTATATTTTTGCCTGA
LOC_Os11g03990
Os.49735.2.S1_at--675--172Chr12:1561120..1561144 (25 bp)
ATTTTTGCCTGATAATTAAGTTGGA
NONE
Os.49735.2.S1_at--26--1251NONE
AGTTGGATATTAGGGCCATCGGGCA
NONE
Target Sequence 
GATTTCTACAGAAGCACTGTTCATCTGAATCAAGGTTTCATGGATTAATTTTTTTGAGGTGGGAGAGTGTAATGATACTG
CATGTCTGCAGGTATCAGTTTTTGATAGCTTGTATCCTATTCGTTGTCATTCATAGTGGTAGGTTCTCAGTTTTGCACTG
ATGTCGCCCGAATGAGGATAATCAAAAGTATCTCGATCAACTGAGATGATATGTTATATTCTGTACAAGATAAGATTAAT
GATTGTGTATCTCTGTGCTTGCATTAGTTAATATTCACCTCGACCGTTTGTATATTTTTGCCTGATAATTAAGTTGGATA
TTAGGGCCATCGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49735.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis