Browse Element(s) Details


OsAffx.2365.1.S1_at

Description tigr:9629.m05840
TID=OsAffx.2365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5945011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59420Os.46769.1.S1_at11/111+34690946..34694404expressed protein
LOC_Os01g59420OsAffx.9474.1.S1_x_at9/111+34690946..34694404expressed protein
LOC_Os01g59420OsAffx.2524.2.S1_at1/111+34690946..34694404expressed protein
LOC_Os01g59430OsAffx.2364.2.S1_at11/111+34702707..34703270hypothetical protein
LOC_Os01g59430OsAffx.2364.2.S1_x_at11/111+34702707..34703270hypothetical protein
LOC_Os01g59440Os.10369.1.S1_a_at10/111+34705945..34709933BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein
LOC_Os01g59460OsAffx.11661.1.S1_x_at11/111+34724153..34724440hypothetical protein
LOC_Os01g59470OsAffx.23857.1.S1_at11/111+34725279..34726990hypothetical protein
LOC_Os01g59480OsAffx.11662.1.S1_at11/111+34728561..34729955hypothetical protein
LOC_Os01g59490Os.27966.1.S1_a_at11/111+34733225..34736049FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2365.1.S1_at--1097--5351Chr01:34715306..34715330 (25 bp)
GAAGAGGTTGGTGGCATCTCTGCCT
LOC_Os01g59450
OsAffx.2365.1.S1_at--63--7891Chr01:34715339..34715363 (25 bp)
GGTTCAGTTGCCAGGGACTATGTCA
LOC_Os01g59450
OsAffx.2365.1.S1_at--60--6371Chr01:34715367..34715391 (25 bp)
GATCCAGCAAGCAAGATTGCCTTTC
LOC_Os01g59450
OsAffx.2365.1.S1_at--165--311Chr01:34715397..34715421 (25 bp)
ATACGTGAGTTATCTTTTCGCCAGG
LOC_Os01g59450
OsAffx.2365.1.S1_at--898--10291Chr01:34715412..34715436 (25 bp)
TTTCGCCAGGCTATTAAAAGTGTGA
LOC_Os01g59450
OsAffx.2365.1.S1_at--797--8511Chr01:34715486..34715510 (25 bp)
TGGAATTGCCAAGCCAGCATCAGAC
LOC_Os01g59450
OsAffx.2365.1.S1_at--32--211Chr01:34715603..34715627 (25 bp)
ATTTGCTAGCCACCTGTCAATGCTA
LOC_Os01g59450
OsAffx.2365.1.S1_at--1008--7071Chr01:34715618..34715642 (25 bp)
GTCAATGCTACTGCTATCCAGATAC
LOC_Os01g59450
OsAffx.2365.1.S1_at--27--2811Chr01:34715674..34715698 (25 bp)
AAGATTGCTGTCACATAACTAGAGA
LOC_Os01g59450
OsAffx.2365.1.S1_at--158--7091Chr01:34716142..34716166 (25 bp)
GTCAAGCTCATTTGAGCGCATTCCT
LOC_Os01g59450
OsAffx.2365.1.S1_at--243--8911Chr01:34716154..34716221 (25 bp)
TGAGCGCATTCCTGAAATTTTCAAA
LOC_Os01g59450
Target Sequence 
GAAGAGGTTGGTGGCATCTCTGCCTCCAGAGATGGTTCAGTTGCCAGGGACTATGTCAGAAGATCCAGCAAGCAAGATTG
CCTTTCATATAATACGTGAGTTATCTTTTCGCCAGGCTATTAAAAGTGTGAATGGGCAAAGAATGGACACCAAGGCTGTG
GATACTGGTCCAGGTGCTCTTGGAATTGCCAAGCCAGCATCAGACGAAAAGGTCAATGCAGCATCAGACAAAAAGGGCAA
TTCTGGAAGGCCCAAGAGGAGGATGCTTAAGAGCTTGATATGGGCTCTGCTCTCATCATTTGCTAGCCACCTGTCAATGC
TACTGCTATCCAGATACTTGTTTGGAGGTGAAGAGGGAAAGGAATCAAAAGATTGCTGTCACATAACTAGAGAGAAGAAA
AACAGAGAGTTCAAAAGTGACACAAGTCATGATCTGTGTGGAATCCAATGTCAAGCTCATTTGAGCGCATTCCTGAAATT
TTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis