Browse Element(s) Details


Os.46769.1.S1_at

Description gb:AK119363.1
DB_XREF= gi:37988986
TID=Os.46769.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G10, full insert sequence.
FL= gb:AK119363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5942011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59390OsAffx.21870.3.S1_x_at11/111+34670389..34671469hypothetical protein
LOC_Os01g59390OsAffx.21870.2.S1_x_at11/111+34670389..34671469hypothetical protein
LOC_Os01g59400NANA1+34678229..34678708hypothetical protein
LOC_Os01g59410NANA1+34683489..34684299VQ motif family protein, expressed
LOC_Os01g59420Os.46769.1.S1_at11/111+34690946..34694404expressed protein
LOC_Os01g59420OsAffx.9474.1.S1_x_at9/111+34690946..34694404expressed protein
LOC_Os01g59420OsAffx.2524.2.S1_at1/111+34690946..34694404expressed protein
LOC_Os01g59430OsAffx.2364.2.S1_at11/111+34702707..34703270hypothetical protein
LOC_Os01g59430OsAffx.2364.2.S1_x_at11/111+34702707..34703270hypothetical protein
LOC_Os01g59440Os.10369.1.S1_a_at10/111+34705945..34709933BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46769.1.S1_at--812--1852Chr01:34693995..34694019 (25 bp)
ACGACTGCCAGATGGTTGCGTGGAT
LOC_Os01g59420
Os.46769.1.S1_at--1159--7711Chr01:34694020..34694044 (25 bp)
GGTGGAGAGGGCGTCGACAGTGAAC
LOC_Os01g59420
Os.46769.1.S1_at--1061--4251Chr01:34694154..34694178 (25 bp)
CCGGCGCCCGGTGGAGCTTGATGAA
LOC_Os01g59420
Os.46769.1.S1_at--260--4932Chr01:34694169..34694193 (25 bp)
GCTTGATGAAGATGGCGCCGGTGGC
LOC_Os01g59420
Os.46769.1.S1_at--817--7131Chr01:34694203..34694227 (25 bp)
GTCTTGCCCCAGGTGAGGCCGACGA
LOC_Os01g59420
Os.46769.1.S1_at--495--5772Chr01:34694306..34694330 (25 bp)
GACGATGTGGATGGTACGATGCTAC
LOC_Os01g59420
Os.46769.1.S1_at--1054--6232Chr01:34694315..34694339 (25 bp)
GATGGTACGATGCTACTGACTTCTT
LOC_Os01g59420
Os.46769.1.S1_at--464--6992Chr01:34694319..34694343 (25 bp)
GTACGATGCTACTGACTTCTTCACG
LOC_Os01g59420
Os.46769.1.S1_at--488--631Chr01:34694324..34694348 (25 bp)
ATGCTACTGACTTCTTCACGATGAC
LOC_Os01g59420
Os.46769.1.S1_at--592--1971Chr01:34694329..34694353 (25 bp)
ACTGACTTCTTCACGATGACGCGAA
LOC_Os01g59420
Os.46769.1.S1_at--632--6312Chr01:34694343..34694367 (25 bp)
GATGACGCGAAGACGACTCGACGAT
LOC_Os01g59420
Target Sequence 
ACGACTGCCAGATGGTTGCGTGGATGGTGGAGAGGGCGTCGACAGTGAACGGCGGCCTGCGAGCGTAGGCGGCGGAGGCG
GCCGCCGAGGAGGAACCGGCAGGGACGTGTCCCCCGTACTCTGTGCCGCGCCAACGACGCCATGACGACCATGGCAACGC
CGGCGCCCGGTGGAGCTTGATGAAGATGGCGCCGGTGGCGTCGGGGCGGTCTTGCCCCAGGTGAGGCCGACGACCAGCGG
GCGGCGCGGCCTACCGGCGACGTCGGGGTGCTGGTGGAGATCGGGTCGGCCATGCCCTCCAGATCGGCGATGACGATGTG
GATGGTACGATGCTACTGACTTCTTCACGATGACGCGAAGACGACTCGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis