Browse Element(s) Details


OsAffx.24687.1.S1_at

Description tigr:9630.m04059
TID=OsAffx.24687.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BolA-like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g424009/11BolA like protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42370Os.27412.1.S1_at11/112+25482215..25485863Leucine Rich Repeat family protein, expressed
LOC_Os02g42380Os.51204.1.S1_at11/112+25491456..25492560TCP family transcription factor containing protein, expressed
LOC_Os02g42390OsAffx.12455.1.S1_at11/112+25498778..25500043hypothetical protein
LOC_Os02g42400OsAffx.24687.1.S1_at9/112+25502534..25503056BolA like protein, putative
LOC_Os02g42400Os.37276.1.S1_at2/112+25502534..25503056BolA like protein, putative
LOC_Os02g42406Os.25250.1.S1_at11/112+25505013..25507718DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g42412Os.51832.1.S1_at11/112+25508640..25509778expressed protein
LOC_Os02g42420NANA2+25512463..25516385retrotransposon protein, putative, unclassified
LOC_Os02g42430NANA2+25517597..25518511GRAM domain containing protein
LOC_Os02g42440Os.8962.1.S1_at11/112+25521815..25523187GRAM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24687.1.S1_at--472--4731Chr02:25502741..25502765 (25 bp)
GCTGTGAGGCAGACTATATCGATGA
LOC_Os02g42400
OsAffx.24687.1.S1_at--126--5871Chr02:25502774..25502798 (25 bp)
GAGCCACTGGCGCTGTGCTTTCAAG
LOC_Os02g42400
OsAffx.24687.1.S1_at--510--1951Chr02:25502779..25502803 (25 bp)
ACTGGCGCTGTGCTTTCAAGAGCTG
LOC_Os02g42400
OsAffx.24687.1.S1_at--125--6311Chr02:25502808..25502832 (25 bp)
GATGAGGCAAAAGCTGCAGTCTTCT
LOC_Os02g42400
OsAffx.24687.1.S1_at--616--2691Chr02:25502818..25502842 (25 bp)
AAGCTGCAGTCTTCTTTGGAGGCCA
LOC_Os02g42400
OsAffx.24687.1.S1_at--678--10851Chr02:25502833..25502857 (25 bp)
TTGGAGGCCAGTGCGATCGACATTG
LOC_Os02g42400
OsAffx.24687.1.S1_at--37--4631Chr02:25502845..25502869 (25 bp)
GCGATCGACATTGAAGATGTTCCTT
LOC_Os02g42400
OsAffx.24687.1.S1_at--186--6291Chr02:25502860..25502884 (25 bp)
GATGTTCCTTACAAGCATGCTGGGC
LOC_Os02g42400
OsAffx.24687.1.S1_at--379--9851Chr02:25502869..25502893 (25 bp)
TACAAGCATGCTGGGCATACAGCTG
LOC_Os02g42400
OsAffx.24687.1.S1_at--719--1631NONE
AGCGTCACAGGATGGATCGAACTAC
NONE
OsAffx.24687.1.S1_at--947--3471Chr03:6264387..6264657 (25 bp)
CAGGATGGATCGAACTACAGACCTT
NONE
Target Sequence 
GCTGTGAGGCAGACTATATCGATGATGGCTCACGAGCCACTGGCGCTGTGCTTTCAAGAGCTGCTCGGATGAGGCAAAAG
CTGCAGTCTTCTTTGGAGGCCAGTGCGATCGACATTGAAGATGTTCCTTACAAGCATGCTGGGCATACAGCTGTCAAGGA
CAATGCGAATGAGACGCATTTTAACATCAGGGTAATTTCGCCCAAGTTTGAGGGCCAGAGCCTTGTGAAGCGTCACAGGA
TGGATCGAACTACAGACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis