Browse Element(s) Details


Os.48784.1.S1_at

Description gb:AK105281.1
DB_XREF= gi:32990490
TID=Os.48784.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C04, full insert sequence.
FL= gb:AK105281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g367604/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36740OsAffx.17362.1.S1_at11/118+23061693..23062433Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g36750OsAffx.17363.1.S1_at10/118+23074014..23075064hypothetical protein
LOC_Os08g36760Os.48784.1.S1_at4/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36760Os.27966.1.S1_a_at1/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36774Os.23300.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36774Os.27108.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36790Os.4379.1.S1_at11/118+23101606..23108000bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48784.1.S1_at--566--3071Chr08:23083978..23084002 (25 bp)
AATCTTGATCAGCACATCTCCAGGA
LOC_Os08g36760
Os.48784.1.S1_at--1143--5511Chr08:23084007..23084031 (25 bp)
GAAAAGGCCATCACACCTTAGCAAG
LOC_Os08g36760
Os.48784.1.S1_at--1079--691Chr08:23084041..23084065 (25 bp)
ATGAGTTCGCTGAGTGGGTGCTTCA
LOC_Os08g36760
Os.48784.1.S1_at--1086--1151Chr08:23084096..23084305 (25 bp)
AGTCAAGCGGCACTGTCACTTTCAA
LOC_Os08g36760
Os.48784.1.S1_at--576--6211NONE
GAGGCTCTCAATCATATCCAATGGT
NONE
Os.48784.1.S1_at--392--10331Chr08:23084607..23084631 (25 bp)
TTTCATCCACTATTAGACTCTAGAG
NONE
Os.48784.1.S1_at--673--7051Chr08:23084648..23084672 (25 bp)
GTAACTATGAGAACACGCTGTCTAT
NONE
Os.48784.1.S1_at--749--4731Chr08:23084664..23084688 (25 bp)
GCTGTCTATTGTGCTTCAAGCCTTG
NONE
Os.48784.1.S1_at--812--9711Chr08:23084679..23084723 (25 bp)
TCAAGCCTTGTACCATGACTTTTTT
NONE
Os.48784.1.S1_at--688--7011Chr08:23084738..23084762 (25 bp)
GTACATGACGTATAATCACCCCACC
NONE
Os.48784.1.S1_at--247--3351Chr08:23084759..23084783 (25 bp)
CACCCGGGATACTGGCATTTTTCTA
NONE
Target Sequence 
AATCTTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAATGAGTTCGCTGAGTGG
GTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAAGCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGG
GAACCAAAAGGCTTGCTAGTATAGAATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATCATATCCAATGGTCT
GTCATTACAAGATTTATTCTAGAATTTCCCTTTTTATTCTGCTCAGGAACAAAAGGAAGTTGACGCAGAGGGAAGGAGTT
GTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAA
CTACAATATGTCAATTCCAACCATTCCTCTTTTATACAGCAAAATTTCATCCACTATTAGACTCTAGAGAGCAAAGATTC
TTCTTGTAACTATGAGAACACGCTGTCTATTGTGCTTCAAGCCTTGTACCATGACTTTTTTTTTAATTAGCTCTGTACAT
GACGTATAATCACCCCACCCGGGATACTGGCATTTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis