Browse Element(s) Details


OsAffx.30954.2.S1_x_at

Description tigr:9639.m01247
TID=OsAffx.30954.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to serpin homolog WZS3 - wheat
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1356011/11Serpin family protein
LOC_Os11g135401/11Serpin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13520OsAffx.30952.1.S1_at11/1111+7405681..7408698hypothetical protein
LOC_Os11g13530OsAffx.30954.1.S1_at11/1111+7415097..7416470Serpin family protein
LOC_Os11g13540OsAffx.30954.1.S1_at11/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13540OsAffx.30954.2.S1_x_at1/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13550NANA11+7427808..7428296hypothetical protein
LOC_Os11g13560OsAffx.30954.2.S1_x_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13560OsAffx.30954.2.S1_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13570Os.6098.1.A1_at10/1111+7433174..7434610PrMC3, putative, expressed
LOC_Os11g13580NANA11+7437492..7437719hypothetical protein
LOC_Os11g13590OsAffx.7104.1.S1_at11/1111+7439363..7439659expressed protein
LOC_Os11g13600NANA11+7442044..7448041retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.5.S1_x_at5/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.2.S1_x_at3/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13620Os.54685.1.S1_at11/1111+7455864..7457242expressed protein
LOC_Os11g13620OsAffx.7080.1.S1_x_at1/1111+7455864..7457242expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30954.2.S1_x_at--184--2471Chr11:7430786..7430810 (25 bp)
AACAACAACAGAAACCTCGTGTTCT
LOC_Os11g13560
OsAffx.30954.2.S1_x_at--241--1431Chr11:7430777..7430801 (25 bp)
AGAAACCTCGTGTTCTCGCTGGTGT
LOC_Os11g13560
OsAffx.30954.2.S1_x_at--897--7151Chr11:7430391..7430669 (25 bp)
GTCTACCGCGCCGTGGAGCCAAAGA
LOC_Os11g13560
OsAffx.30954.2.S1_x_at--82--9971Chr11:7430388..7430666 (25 bp)
TACCGCGCCGTGGAGCCAAAGAAAT
LOC_Os11g13560
OsAffx.30954.2.S1_x_at--139--4211Chr11:7430386..7430664 (25 bp)
CCGCGCCGTGGAGCCAAAGAAATCA
LOC_Os11g13560
OsAffx.30954.2.S1_x_at--349--6251Chr11:7430298..7430322 (25 bp)
GATGGATCAGTTCATCGCCTCACCA
LOC_Os11g13560
OsAffx.30954.2.S1_x_at--721--7791Chr11:7430234..7430258 (25 bp)
GGTCCGATCCCTTCCCCAGGGAGAG
LOC_Os11g13560
OsAffx.30954.2.S1_x_at--269--1931Chr11:7430180..7430204 (25 bp)
ACGGCAGCTCCGTCAACGTCCGGTT
LOC_Os11g13560
OsAffx.30954.2.S1_x_at--109--7091Chr11:7430169..7430193 (25 bp)
GTCAACGTCCGGTTCATGCGCAGCC
LOC_Os11g13560
OsAffx.30954.2.S1_x_at--693--1891Chr11:7430165..7430189 (25 bp)
ACGTCCGGTTCATGCGCAGCCGGGA
LOC_Os11g13560
OsAffx.30954.2.S1_x_at--478--6172Chr11:7430142..7430166 (25 bp)
GAGGATCAGTACATCGGCTTCTACG
LOC_Os11g13560
Target Sequence 
AACAACAACAGAAACCTCGTGTTCTCGCTGGTGTCCCTGTACGCCGCGCTGGCGCTGGTGGCGGCCGGGGGACAGGGCAC
CACCCTCCACGAGCTCCTCGCGCTGCTCGGCGCATCGTCGCTCGACGACCTCGCGGAGTCCGTCTACCGCGCCGTGGAGC
CAAAGAAATCAAGAAAGAAGATCAACGAGTGGGTGTCCAAGGCGACGAACAAGCTCATCCCTGAGATCCTCCCAGATGGA
TCAGTTCATCGCCTCACCACCCTGGTGCTCGTGAACGCCATCTACTTCAAGGGCAAGTGGTCCGATCCCTTCCCCAGGGA
GAGCACCACCACCGGCAAGTTCCACCGCCTCGACGGCAGCTCCGTCAACGTCCGGTTCATGCGCAGCCGGGAGGATCAGT
ACATCGGCTTCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30954.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis