Browse Element(s) Details


OsAffx.31673.1.S1_at

Description tigr:9640.m00940
TID=OsAffx.31673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1002011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09990OsAffx.435.1.S1_at3/1112+5288205..5293586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g09990OsAffx.16946.1.S1_at1/1112+5288205..5293586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10000OsAffx.31671.1.S1_at11/1112+5294432..5298002Transposable element protein, putative, Transposase_28
LOC_Os12g10010OsAffx.31672.1.S1_at11/1112+5300720..5302470hypothetical protein
LOC_Os12g10020OsAffx.31673.1.S1_at11/1112+5308741..5309115hypothetical protein
LOC_Os12g10030OsAffx.22896.1.S1_x_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10030OsAffx.1331.1.S1_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10030Os.26833.2.S1_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10040Os.45173.1.S1_x_at3/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040OsAffx.20691.1.A1_x_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040Os.45173.3.S1_x_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040OsAffx.20877.1.S1_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10050NANA12+5321142..5324477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10060OsAffx.8201.1.S1_x_at2/1112+5327482..5329764retrotransposon protein, putative, unclassified
LOC_Os12g10060OsAffx.8201.1.S1_at1/1112+5327482..5329764retrotransposon protein, putative, unclassified
LOC_Os12g10060OsAffx.16111.1.S1_at1/1112+5327482..5329764retrotransposon protein, putative, unclassified
LOC_Os12g10070OsAffx.7546.1.S1_at11/1112+5330506..5333653hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31673.1.S1_at--94--3111Chr12:5309025..5309049 (25 bp)
AATAGTGAAGAGGATTATGCCCAAA
LOC_Os12g10020
OsAffx.31673.1.S1_at--504--711Chr12:5308911..5308935 (25 bp)
ATGATATGGAAGTTGGCCCCCGTCA
LOC_Os12g10020
OsAffx.31673.1.S1_at--346--4231Chr12:5308892..5308916 (25 bp)
CCGTCATCCAGTTTATGCTTGACCT
LOC_Os12g10020
OsAffx.31673.1.S1_at--141--6831Chr12:5308882..5308906 (25 bp)
GTTTATGCTTGACCTAAGTATCCCA
LOC_Os12g10020
OsAffx.31673.1.S1_at--847--2831Chr12:5308867..5308891 (25 bp)
AAGTATCCCAAGTCAATACACTATC
LOC_Os12g10020
OsAffx.31673.1.S1_at--966--7071Chr12:5308856..5308880 (25 bp)
GTCAATACACTATCCTTAGGCATCA
LOC_Os12g10020
OsAffx.31673.1.S1_at--293--10271Chr12:5308841..5308865 (25 bp)
TTAGGCATCACGATCGGTTCCGAAG
LOC_Os12g10020
OsAffx.31673.1.S1_at--48--6391Chr12:5308830..5308854 (25 bp)
GATCGGTTCCGAAGGCTAAATTATT
LOC_Os12g10020
OsAffx.31673.1.S1_at--1068--2991Chr12:5308803..5308827 (25 bp)
AATGACCCAAGGTTTCACACTCTTT
LOC_Os12g10020
OsAffx.31673.1.S1_at--629--7871Chr12:5308793..5308817 (25 bp)
GGTTTCACACTCTTTTTCAGAAAGC
LOC_Os12g10020
OsAffx.31673.1.S1_at--24--5571Chr12:5308774..5308798 (25 bp)
GAAAGCTGTGTTTCAAAATCTTTAC
LOC_Os12g10020
Target Sequence 
AATAGTGAAGAGGATTATGCCCAAAGTGAGGAGAGCAAACAAGAGGAGGATGTTGATGAGCTGAGGAGGATGGTGATGAC
GGCAGTGGTGACGATGATGAGGGTGAGAGTGGAGATGATATGGAAGTTGGCCCCCGTCATCCAGTTTATGCTTGACCTAA
GTATCCCAAGTCAATACACTATCCTTAGGCATCACGATCGGTTCCGAAGGCTAAATTATTCAAATGACCCAAGGTTTCAC
ACTCTTTTTCAGAAAGCTGTGTTTCAAAATCTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis