Browse Element(s) Details


OsAffx.7546.1.S1_at

Description tigr:9640.m00945
TID=OsAffx.7546.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1007011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10020OsAffx.31673.1.S1_at11/1112+5308741..5309115hypothetical protein
LOC_Os12g10030OsAffx.22896.1.S1_x_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10030OsAffx.1331.1.S1_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10030Os.26833.2.S1_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10040Os.45173.1.S1_x_at3/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040OsAffx.20691.1.A1_x_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040Os.45173.3.S1_x_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040OsAffx.20877.1.S1_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10050NANA12+5321142..5324477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10060OsAffx.8201.1.S1_x_at2/1112+5327482..5329764retrotransposon protein, putative, unclassified
LOC_Os12g10060OsAffx.8201.1.S1_at1/1112+5327482..5329764retrotransposon protein, putative, unclassified
LOC_Os12g10060OsAffx.16111.1.S1_at1/1112+5327482..5329764retrotransposon protein, putative, unclassified
LOC_Os12g10070OsAffx.7546.1.S1_at11/1112+5330506..5333653hypothetical protein
LOC_Os12g10080NANA12+5335762..5336349hypothetical protein
LOC_Os12g10090OsAffx.19542.3.S1_x_at7/1112+5338918..5342704retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10090OsAffx.21754.1.S1_x_at1/1112+5338918..5342704retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10090OsAffx.9949.1.S1_at1/1112+5338918..5342704retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10100OsAffx.32051.1.S1_x_at1/1112+5346839..5347288hypothetical protein
LOC_Os12g10110OsAffx.17420.1.S1_at1/1112+5348232..5349218retrotransposon protein, putative, unclassified
LOC_Os12g10120OsAffx.32051.1.S1_x_at1/1112+5355356..5355805hypothetical protein
LOC_Os12g10130NANA12+5356646..5358682retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7546.1.S1_at--107--4871Chr12:5331058..5331082 (25 bp)
GCTAGATATCTCAAAACGGCTCGAA
LOC_Os12g10070
OsAffx.7546.1.S1_at--403--1931Chr12:5331043..5331067 (25 bp)
ACGGCTCGAAGGTTCTTTGGAGACT
LOC_Os12g10070
OsAffx.7546.1.S1_at--117--2011Chr12:5331021..5331045 (25 bp)
ACTCTAGTAGTCTGCTGTGGATCAA
LOC_Os12g10070
OsAffx.7546.1.S1_at--775--7611Chr12:5330993..5331017 (25 bp)
GGGACAGATTCCTCGAAATCCATAA
LOC_Os12g10070
OsAffx.7546.1.S1_at--620--4171Chr12:5330935..5330959 (25 bp)
CCCAGTGGCATATCTCGAACAACAT
LOC_Os12g10070
OsAffx.7546.1.S1_at--625--2731Chr12:5330884..5330908 (25 bp)
AAGAATTGCCGATCGCTGTGAAAGA
LOC_Os12g10070
OsAffx.7546.1.S1_at--760--5311Chr12:5330861..5330885 (25 bp)
GAAGGGACCTGGAAGCAACAATCCA
LOC_Os12g10070
OsAffx.7546.1.S1_at--648--3031Chr12:5330842..5330866 (25 bp)
AATCCAAACTAGCAGGGCCTCTATC
LOC_Os12g10070
OsAffx.7546.1.S1_at--1055--6391Chr12:5330754..5330778 (25 bp)
GATCGGCTGAACACTCGGCAGATAA
LOC_Os12g10070
OsAffx.7546.1.S1_at--858--5111Chr12:5330700..5330724 (25 bp)
GCACAGATTGCCCTTGAAGAACAGA
LOC_Os12g10070
OsAffx.7546.1.S1_at--1064--3271Chr12:5330617..5330641 (25 bp)
CAAATACTTAGCTGGTCTGACAAAA
LOC_Os12g10070
Target Sequence 
GCTAGATATCTCAAAACGGCTCGAAGGTTCTTTGGAGACTCTAGTAGTCTGCTGTGGATCAATCAGGGACAGATTCCTCG
AAATCCATAATAAACTCCCAGATGAATTAGCCGATGTCATTACCCCAGTGGCATATCTCGAACAACATCGGCTCAAACTT
AAGAAGGCAAAGCAAAGAATTGCCGATCGCTGTGAAAGAAGGGACCTGGAAGCAACAATCCAAACTAGCAGGGCCTCTAT
CAATGAGGAAAAAGCAAAACTTGATGAGTTGGAAGCTGGTCCAAGTTCTACTCAAGCCAACATCGATCGGCTGAACACTC
GGCAGATAAAACTACTAGCTGAATTGGAGCAATGCAGTGCACAGATTGCCCTTGAAGAACAGAAGCTTGCCGATCTGCCC
AAAGCCATCGAAGATCAAAAATCAAAGCTAAAATCTTCTGTCAAATACTTAGCTGGTCTGACAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis