Browse Element(s) Details


OsAffx.17420.1.S1_at

Description tigr:9636.m03995
TID=OsAffx.17420.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3954011/11Zinc knuckle family protein
LOC_Os05g224201/11retrotransposon protein, putative, unclassified
LOC_Os12g101101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39490Os.49559.1.S1_at10/118+24854032..24858377expressed protein
LOC_Os08g39500Os.7955.1.A1_at6/118+24860221..2486164460S ribosomal protein L31, putative, expressed
LOC_Os08g39510OsAffx.29599.1.S1_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39510OsAffx.29599.1.S1_s_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39520OsAffx.29600.2.S1_s_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39520OsAffx.29600.1.S1_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39530Os.55426.1.S1_at4/118+24873097..24873312hypothetical protein
LOC_Os08g39540OsAffx.17420.1.S1_at11/118+24880065..24880589Zinc knuckle family protein
LOC_Os08g39550Os.47490.1.S1_at10/118+24882912..24884520Leucine Rich Repeat family protein, expressed
LOC_Os08g39560Os.53568.1.S1_at11/118+24890473..24893537OTU-like cysteine protease family protein, expressed
LOC_Os08g39570Os.52365.1.S1_at11/118+24898997..24906595Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17420.1.S1_at--356--10651Chr08:24880097..24880121 (25 bp)
TTCCAACTTACAAGGCCTGCAAAAT
LOC_Os08g39540
OsAffx.17420.1.S1_at--224--351Chr08:24880140..24880164 (25 bp)
ATAATGCTCTTTGAAGAACCTCCCC
LOC_Os08g39540
OsAffx.17420.1.S1_at--752--1751Chr08:24880157..24880181 (25 bp)
ACCTCCCCAAGCTTCTAGTGACAAA
LOC_Os08g39540
OsAffx.17420.1.S1_at--40--7371Chr08:24880174..24880198 (25 bp)
GTGACAAAGAACGAGTCCAATCCTC
LOC_Os08g39540
OsAffx.17420.1.S1_at--241--4471Chr08:24880205..24880229 (25 bp)
GCCTGAAGACTACAGCATCGGTCTA
LOC_Os08g39540
OsAffx.17420.1.S1_at--44--4971Chr08:24880219..24880243 (25 bp)
GCATCGGTCTAAATCACTTAAAGCA
LOC_Os08g39540
OsAffx.17420.1.S1_at--712--3091Chr08:24880243..24880267 (25 bp)
AATACCCTGCAAATGGAAGCTGCCA
LOC_Os08g39540
OsAffx.17420.1.S1_at--540--4433Chr08:24880264..24880288 (25 bp)
GCCATCTGACTACGGCAAGACGGAA
LOC_Os08g39540
OsAffx.17420.1.S1_at--11--5751Chr08:24880282..24880306 (25 bp)
GACGGAAGGCAAATGTCACATGTTT
LOC_Os08g39540
OsAffx.17420.1.S1_at--1149--5271Chr08:24880372..24880396 (25 bp)
GAAGGAGTTTCCCATGGCAACCAAG
LOC_Os08g39540
OsAffx.17420.1.S1_at--771--391Chr08:24880494..24880518 (25 bp)
ATCAGCCTGGAAGAGGACCAAGACA
LOC_Os08g39540
Target Sequence 
TTCCAACTTACAAGGCCTGCAAAATATGGGGATAAAACAACCCATAATGCTCTTTGAAGAACCTCCCCAAGCTTCTAGTG
ACAAAGAACGAGTCCAATCCTCACTAAAGCCTGAAGACTACAGCATCGGTCTAAATCACTTAAAGCAATACCCTGCAAAT
GGAAGCTGCCATCTGACTACGGCAAGACGGAAGGCAAATGTCACATGTTTTGGTTGTGGTGAGAAAGGACATTATGCCAA
TAAATGCCCCCAAAGAAGGTTGAGAGTTGGACCGAGAAGGAGTTTCCCATGGCAACCAAGGAGAGATGGCTGTTGTTTTT
CTTGTGGTCAATTCGGACATTATGCGATAGACTGTACCCAAGACACCAATGAAGAACAAGAAACCCGGCCTTCGCAGATC
AGCCTGGAAGAGGACCAAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis