Browse Element(s) Details


OsAffx.29600.2.S1_s_at

Description tigr:9632.m04094
TID=OsAffx.29600.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3952011/11hAT family dimerisation domain containing protein
LOC_Os04g4281011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39480NANA8+24843443..24843772hypothetical protein
LOC_Os08g39490Os.49559.1.S1_at10/118+24854032..24858377expressed protein
LOC_Os08g39500Os.7955.1.A1_at6/118+24860221..2486164460S ribosomal protein L31, putative, expressed
LOC_Os08g39510OsAffx.29599.1.S1_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39510OsAffx.29599.1.S1_s_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39520OsAffx.29600.2.S1_s_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39520OsAffx.29600.1.S1_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39530Os.55426.1.S1_at4/118+24873097..24873312hypothetical protein
LOC_Os08g39540OsAffx.17420.1.S1_at11/118+24880065..24880589Zinc knuckle family protein
LOC_Os08g39550Os.47490.1.S1_at10/118+24882912..24884520Leucine Rich Repeat family protein, expressed
LOC_Os08g39560Os.53568.1.S1_at11/118+24890473..24893537OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29600.2.S1_s_at--129--1712Chr08:24868611..24868635 (25 bp)
ACCAATGGCAACCTTTGCTTGCTGA
LOC_Os08g39520
OsAffx.29600.2.S1_s_at--124--4932Chr08:24868627..24868651 (25 bp)
GCTTGCTGATTGGTTAGTCTTTTCC
LOC_Os08g39520
OsAffx.29600.2.S1_s_at--446--10192Chr08:24868695..24868719 (25 bp)
TATTTTCTGGATCTACATACCCCAC
LOC_Os08g39520
OsAffx.29600.2.S1_s_at--471--1332Chr08:24868755..24868779 (25 bp)
AGAGGGCATTGCTTGCTGCATCTAA
LOC_Os08g39520
OsAffx.29600.2.S1_s_at--348--10132Chr08:24868867..24868891 (25 bp)
TATGATCATTGCCACTACCCTTGAT
LOC_Os08g39520
OsAffx.29600.2.S1_s_at--368--6712Chr08:24869240..24869264 (25 bp)
GTTCCCTGTTGTGTCAAGGTTGGCA
LOC_Os08g39520
OsAffx.29600.2.S1_s_at--1021--10672Chr08:24869281..24869305 (25 bp)
TTCCAGCGTCTAGTGTATCATCTGA
LOC_Os08g39520
OsAffx.29600.2.S1_s_at--324--6292Chr08:24869337..24869361 (25 bp)
GATGATTACCGAAGTTCCTTGCGCC
LOC_Os08g39520
OsAffx.29600.2.S1_s_at--839--4532Chr08:24869359..24869383 (25 bp)
GCCCATCAATGGTTCAAGCACTAAT
LOC_Os08g39520
OsAffx.29600.2.S1_s_at--136--4892Chr08:24869388..24869412 (25 bp)
GCTTCTAGTTGGATACGTGGTTCTC
LOC_Os08g39520
OsAffx.29600.2.S1_s_at--916--5632Chr08:24869423..24869537 (25 bp)
GACACCTCCAATGGCTGTGGCGGAA
LOC_Os08g39520
Target Sequence 
ACCAATGGCAACCTTTGCTTGCTGATTGGTTAGTCTTTTCCAAAATTCATCCAATATTGAAGGCACTTGCTGAAGTAACT
ACTGTATTTTCTGGATCTACATACCCCACAGCAAATGTTTTTTATCCAAGCATTGTGAATGTGAAGAGGGCATTGCTTGC
TGCATCTAAGTCTACTAATAGGGACAAGGTTTTGAAGAATATGGTTGAAGCTATTTTGGAAAAGTTTGATAAATATTGGA
AAGAGAAGAACAACCTTATGATCATTGCCACTACCCTTGATCCTAGGTTTAAGATAAGGTTCCCTGTTGTGTCAAGGTTG
GCAAAGAGATTCTTGACTGTTCCAGCGTCTAGTGTATCATCTGAAACAACTTTTAGTGCTGGTGGAAGAGTGCTTGATGA
TTACCGAAGTTCCTTGCGCCCATCAATGGTTCAAGCACTAATATGTGCTTCTAGTTGGATACGTGGTTCTCAAGATAACA
AGACACCTCCAATGGCTGTGGCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29600.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis