Browse Element(s) Details


Os.47490.1.S1_at

Description gb:AK060670.1
DB_XREF= gi:32970688
TID=Os.47490.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-G04, full insert sequence.
FL= gb:AK120908.1 gb:AK120866.1 gb:AK060670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3955010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39490Os.49559.1.S1_at10/118+24854032..24858377expressed protein
LOC_Os08g39500Os.7955.1.A1_at6/118+24860221..2486164460S ribosomal protein L31, putative, expressed
LOC_Os08g39510OsAffx.29599.1.S1_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39510OsAffx.29599.1.S1_s_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39520OsAffx.29600.2.S1_s_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39520OsAffx.29600.1.S1_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39530Os.55426.1.S1_at4/118+24873097..24873312hypothetical protein
LOC_Os08g39540OsAffx.17420.1.S1_at11/118+24880065..24880589Zinc knuckle family protein
LOC_Os08g39550Os.47490.1.S1_at10/118+24882912..24884520Leucine Rich Repeat family protein, expressed
LOC_Os08g39560Os.53568.1.S1_at11/118+24890473..24893537OTU-like cysteine protease family protein, expressed
LOC_Os08g39570Os.52365.1.S1_at11/118+24898997..24906595Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0009411biological_processresponse to UV
GO:0009650biological_processUV protection
GO:0042221biological_processresponse to chemical stimulus
GO:0042493biological_processresponse to drug
GO:0009507cellular_componentchloroplast
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47490.1.S1_at--669--3411Chr08:24883297..24883321 (25 bp)
CAGAGCCGTCCGATCGATCGGGAGA
LOC_Os08g39550
Os.47490.1.S1_at--1043--491Chr08:24883281..24883305 (25 bp)
ATCGGGAGAGCCTGATCGAACGTGT
LOC_Os08g39550
Os.47490.1.S1_at--997--9351Chr08:24883266..24883290 (25 bp)
TCGAACGTGTGGTGTGCGATGTACC
LOC_Os08g39550
Os.47490.1.S1_at--205--6971Chr08:24883246..24883270 (25 bp)
GTACCGTGTACGATGCAACGAACTT
LOC_Os08g39550
Os.47490.1.S1_at--1100--6671Chr08:24883196..24883220 (25 bp)
GTTGCTGCTTAAGTATTAACTCACT
LOC_Os08g39550
Os.47490.1.S1_at--238--2011Chr08:24883178..24883202 (25 bp)
ACTCACTTGGGCTATAGTTTTGGGC
LOC_Os08g39550
Os.47490.1.S1_at--1060--31Chr08:24883165..24883189 (25 bp)
ATAGTTTTGGGCTTGGGTACATATA
LOC_Os08g39550
Os.47490.1.S1_at--1001--5371Chr08:24883074..24883098 (25 bp)
GAAGAATGTTTTCTCTTTCCTGCCT
LOC_Os08g39550
Os.47490.1.S1_at--1111--9791Chr08:24883031..24883055 (25 bp)
TAACCTTTTTTGCTAGTGATTTACT
LOC_Os08g39550
Os.47490.1.S1_at--1031--7911Chr08:24882933..24882957 (25 bp)
GGTTGTGGTTTCATATTTGTGCGCT
LOC_Os08g39550
Os.47490.1.S1_at--620--231NONE
ATATTTGTGCGCTTGGGCCCTTGGC
NONE
Target Sequence 
CAGAGCCGTCCGATCGATCGGGAGAGCCTGATCGAACGTGTGGTGTGCGATGTACCGTGTACGATGCAACGAACTTACGT
GTTCGTATATATGGTTAATTAGTTGCTGCTTAAGTATTAACTCACTTGGGCTATAGTTTTGGGCTTGGGTACATATAGAA
CAAGATGAGAATTTGTGCCTAGTGTGTGTGTGNGTGAGAGAAAGAGGAAGTGGTTAAGGAAAAGAAGAATGTTTTCTCTT
TCCTGCCTTTCTCTTCTTTATACTTTTAACCTTTTTTGCTAGTGATTTACTTGATAGTTCTACTTTAAAGTTTGTATTGT
ACAAGTGACAAAAGCATAAGAAATGCTAAAGATCTTGTATGAGAGGTTGTGGTTTCATATTTGTGCGCTTGGGCCCTTGG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis