Browse Element(s) Details


Os.52365.1.S1_at

Description gb:AK066674.1
DB_XREF= gi:32976692
TID=Os.52365.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073O22, full insert sequence.
FL= gb:AK066674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3957011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39540OsAffx.17420.1.S1_at11/118+24880065..24880589Zinc knuckle family protein
LOC_Os08g39550Os.47490.1.S1_at10/118+24882912..24884520Leucine Rich Repeat family protein, expressed
LOC_Os08g39560Os.53568.1.S1_at11/118+24890473..24893537OTU-like cysteine protease family protein, expressed
LOC_Os08g39570Os.52365.1.S1_at11/118+24898997..24906595Leucine Rich Repeat family protein, expressed
LOC_Os08g39580NANA8+24910422..24914534Tobamovirus movement protein containing protein
LOC_Os08g39590OsAffx.17422.1.S1_at11/118+24927945..24930448Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52365.1.S1_at--673--471Chr08:24906006..24906030 (25 bp)
ATCTGCTCTGCTACAACTTCAGTTG
LOC_Os08g39570
Os.52365.1.S1_at--698--2051Chr08:24906021..24906045 (25 bp)
ACTTCAGTTGCTTGCTCGCTTGTTA
LOC_Os08g39570
Os.52365.1.S1_at--786--431Chr08:24906045..24906069 (25 bp)
ATCTTCAGTAAGTGTCTGCCTGCGT
LOC_Os08g39570
Os.52365.1.S1_at--105--9591Chr08:24906071..24906095 (25 bp)
TCTTGCTGGCTAATCGGTGACTGGA
LOC_Os08g39570
Os.52365.1.S1_at--900--5731Chr08:24906089..24906113 (25 bp)
GACTGGATTGCCGACTAGCACAGCA
LOC_Os08g39570
Os.52365.1.S1_at--957--3451Chr08:24906112..24906136 (25 bp)
CAGTGCTACCTCGTGTTTTGATTTA
LOC_Os08g39570
Os.52365.1.S1_at--277--411Chr08:24906136..24906160 (25 bp)
ATCAGTTTGTTCTGCGAGCCAGGAT
LOC_Os08g39570
Os.52365.1.S1_at--1042--4611Chr08:24906329..24906353 (25 bp)
GCGAGTGTGTGTCTATCAGCTACCC
LOC_Os08g39570
Os.52365.1.S1_at--802--4271Chr08:24906422..24906446 (25 bp)
CCTGTCTGCTCGTGTGGTGTGTGAA
LOC_Os08g39570
Os.52365.1.S1_at--863--9112Chr08:24906517..24906541 (25 bp)
TGCTGCTTGTTCATGCATGCATTCC
LOC_Os08g39570
Os.52365.1.S1_at--966--3511Chr08:24906532..24906556 (25 bp)
CATGCATTCCGGCTGTATTGGTGAA
LOC_Os08g39570
Target Sequence 
ATCTGCTCTGCTACAACTTCAGTTGCTTGCTCGCTTGTTATCTTCAGTAAGTGTCTGCCTGCGTGTCTTGCTGGCTAATC
GGTGACTGGATTGCCGACTAGCACAGCAGTGCTACCTCGTGTTTTGATTTATCAGTTTGTTCTGCGAGCCAGGATATGGG
GCTTCAGGTGTGCCCACTCCGTTTTCCGTGTGTGCTCGGCCGAGTGATGAGTGTGTGTGGCTTTCGCTTGAGTACGAAAC
TGTACGTACGTATTGAAGCAACGGCTGGTTGTGGTTGTGCCTGCCTCTGTCTGTGTGATTGGTGTGGTCTGAGCTAATGA
TGAGCGAGTGTGTGTCTATCAGCTACCCCTGCCTGTTTGCAGCGGATCAGAATAGCTAATAAGAATAAGCAGCGGCTGCG
CCTGTCTGCGGCTGCGCCTGTCTGCTCGTGTGGTGTGTGAATTGTGATTGAGCATGGGGAGTGCTTGATTGCTAGTACAT
TTATATGTGTGCATCTGATGGACCAAGTGGATGCTGCTTGTTCATGCATGCATTCCGGCTGTATTGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis