Browse Element(s) Details


OsAffx.17422.1.S1_at

Description tigr:9636.m04000
TID=OsAffx.17422.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor-like protein kinase - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3959011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39570Os.52365.1.S1_at11/118+24898997..24906595Leucine Rich Repeat family protein, expressed
LOC_Os08g39580NANA8+24910422..24914534Tobamovirus movement protein containing protein
LOC_Os08g39590OsAffx.17422.1.S1_at11/118+24927945..24930448Leucine Rich Repeat family protein, expressed
LOC_Os08g39600OsAffx.29601.1.S1_at11/118+24931797..24934063RNA methyltransferase, TrmH family protein, expressed
LOC_Os08g39610OsAffx.14360.2.A1_at11/118+24935027..24935338hypothetical protein
LOC_Os08g39620OsAffx.22940.2.S1_s_at11/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.1.S1_s_at11/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.3.S1_x_at9/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.5.S1_x_at4/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.2.S1_at4/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.5.S1_at1/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.31552.2.S1_at1/118+24937936..24943750transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17422.1.S1_at--890--9211Chr08:24930062..24930086 (25 bp)
TCCACCATCCTAATCGAGCTCAAAA
LOC_Os08g39590
OsAffx.17422.1.S1_at--617--2171Chr08:24930086..24930110 (25 bp)
ACACTACTCCTACAAGCTAAAGCCT
LOC_Os08g39590
OsAffx.17422.1.S1_at--850--4831Chr08:24930101..24930125 (25 bp)
GCTAAAGCCTGTGTCACTTGCAGTA
LOC_Os08g39590
OsAffx.17422.1.S1_at--53--2071Chr08:24930116..24930140 (25 bp)
ACTTGCAGTAACCACCATTAGCTTA
LOC_Os08g39590
OsAffx.17422.1.S1_at--1079--6751Chr08:24930171..24930195 (25 bp)
GTTAATCGCCGCCAATGCGAGGTTT
LOC_Os08g39590
OsAffx.17422.1.S1_at--264--431Chr08:24930227..24930251 (25 bp)
ATCATTCGCTGATCTGCTCCAGTAG
LOC_Os08g39590
OsAffx.17422.1.S1_at--492--10071Chr08:24930259..24930283 (25 bp)
TAGTGGACACTCTTCTTTAGCTGCA
LOC_Os08g39590
OsAffx.17422.1.S1_at--1105--5151Chr08:24930301..24930325 (25 bp)
GCAACCTCTGCAGAAGTGTAATCGA
LOC_Os08g39590
OsAffx.17422.1.S1_at--1071--6371Chr08:24930328..24930352 (25 bp)
GATCCCTTCCAAACAATTGTATCTG
LOC_Os08g39590
OsAffx.17422.1.S1_at--978--9491Chr08:24930365..24930389 (25 bp)
TCTCCTCTTGTGTTTTTGGCATCAT
LOC_Os08g39590
OsAffx.17422.1.S1_at--337--10851Chr08:24930380..24930404 (25 bp)
TTGGCATCATGGCATGTCCTGTTTA
LOC_Os08g39590
Target Sequence 
TCCACCATCCTAATCGAGCTCAAAACACTACTCCTACAAGCTAAAGCCTGTGTCACTTGCAGTAACCACCATTAGCTTAC
AAGAACTTCAAATTCTGTAGATTATTACTGTTAATCGCCGCCAATGCGAGGTTTGAGATGGCAAAACGAAGCAAGAATCA
TCAGGATCATTCGCTGATCTGCTCCAGTAGGCAGTAGTAGTGGACACTCTTCTTTAGCTGCATCATCGGCTGCAAGTCTG
CAACCTCTGCAGAAGTGTAATCGATTGATCCCTTCCAAACAATTGTATCTGCCGTTTTCTTTTTCTCCTCTTGTGTTTTT
GGCATCATGGCATGTCCTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis