Browse Element(s) Details


Os.55426.1.S1_at

Description gb:AK108070.1
DB_XREF= gi:32993279
TID=Os.55426.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-C06, full insert sequence.
FL= gb:AK108070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g395304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39490Os.49559.1.S1_at10/118+24854032..24858377expressed protein
LOC_Os08g39500Os.7955.1.A1_at6/118+24860221..2486164460S ribosomal protein L31, putative, expressed
LOC_Os08g39510OsAffx.29599.1.S1_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39510OsAffx.29599.1.S1_s_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39520OsAffx.29600.2.S1_s_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39520OsAffx.29600.1.S1_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39530Os.55426.1.S1_at4/118+24873097..24873312hypothetical protein
LOC_Os08g39540OsAffx.17420.1.S1_at11/118+24880065..24880589Zinc knuckle family protein
LOC_Os08g39550Os.47490.1.S1_at10/118+24882912..24884520Leucine Rich Repeat family protein, expressed
LOC_Os08g39560Os.53568.1.S1_at11/118+24890473..24893537OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55426.1.S1_at--493--1691Chr08:24873237..24873261 (25 bp)
AGCCAGGAGGTCGTCGATGCATCCA
LOC_Os08g39530
Os.55426.1.S1_at--399--2491Chr08:24873202..24873226 (25 bp)
AACAGATTCCCCTGAACTTGCTGAA
LOC_Os08g39530
Os.55426.1.S1_at--852--8771Chr08:24873127..24873151 (25 bp)
TGTTTGCCACGCAAGCGAGGGTTGC
LOC_Os08g39530
Os.55426.1.S1_at--756--9171Chr08:24873105..24873129 (25 bp)
TGCCGCGATGAACCACTACTAATTG
LOC_Os08g39530
Os.55426.1.S1_at--342--8851Chr08:24873075..24873099 (25 bp)
TGATGCCACCAAATGTACCAGTCCA
NONE
Os.55426.1.S1_at--1101--491Chr08:24873044..24873068 (25 bp)
ATCGGTGTGTGTGAGGCATTTCCCA
NONE
Os.55426.1.S1_at--1124--3271Chr08:24872979..24873003 (25 bp)
CAAATATATCCCTTGCACCGATTTA
NONE
Os.55426.1.S1_at--159--5971Chr08:24872947..24872971 (25 bp)
GAGAACCGACGCTTACAGATGTTTG
NONE
Os.55426.1.S1_at--16--751Chr08:24872929..24872953 (25 bp)
ATGTTTGTCTATGTGTCAGTTCTCA
NONE
Os.55426.1.S1_at--159--9891Chr08:24872885..24872909 (25 bp)
TACTTTCATATGTACCGGTCCTTGA
NONE
Os.55426.1.S1_at--1126--6351Chr08:24872846..24872870 (25 bp)
GATGCCACTACTCAATTGTGCTCTT
NONE
Target Sequence 
AGCCAGGAGGTCGTCGATGCATCCACGTGCGTGGCAACAGATTCCCCTGAACTTGCTGAAGAAAGGAAAAAACTTGAGAA
GCTCACGGCAATCTTCTCTCGGCCTCGCGGTGTTTGCCACGCAAGCGAGGGTTGCCGCGATGAACCACTACTAATTGATG
ACTGATGCCACCAAATGTACCAGTCCACACAAAATCGGTGTGTGTGAGGCATTTCCCATCTTCCCCGACCTGTGCAGGAG
GCCAAAATTAGGAACCGGCAAATATATCCCTTGCACCGATTTATTTTGCTGAGAACCGACGCTTACAGATGTTTGTCTAT
GTGTCAGTTCTCAACAGAAACCAGCATATATGTACTTTCATATGTACCGGTCCTTGAAAAATGGCACTAATGATGCCACT
ACTCAATTGTGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis