Browse Element(s) Details


OsAffx.29599.1.S1_s_at

Description tigr:9636.m03992
TID=OsAffx.29599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3951011/11hypothetical protein
LOC_Os04g4282011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39480NANA8+24843443..24843772hypothetical protein
LOC_Os08g39490Os.49559.1.S1_at10/118+24854032..24858377expressed protein
LOC_Os08g39500Os.7955.1.A1_at6/118+24860221..2486164460S ribosomal protein L31, putative, expressed
LOC_Os08g39510OsAffx.29599.1.S1_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39510OsAffx.29599.1.S1_s_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39520OsAffx.29600.2.S1_s_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39520OsAffx.29600.1.S1_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39530Os.55426.1.S1_at4/118+24873097..24873312hypothetical protein
LOC_Os08g39540OsAffx.17420.1.S1_at11/118+24880065..24880589Zinc knuckle family protein
LOC_Os08g39550Os.47490.1.S1_at10/118+24882912..24884520Leucine Rich Repeat family protein, expressed
LOC_Os08g39560Os.53568.1.S1_at11/118+24890473..24893537OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29599.1.S1_s_at--490--4453Chr08:24866949..24866973 (25 bp)
GCCTTCATGGATAGGGAGCGCCGAT
LOC_Os08g39510
OsAffx.29599.1.S1_s_at--682--252Chr08:24866959..24866983 (25 bp)
ATAGGGAGCGCCGATTGGCAAGCAT
LOC_Os08g39510
OsAffx.29599.1.S1_s_at--1131--9313Chr08:24867046..24867070 (25 bp)
TCGCCTCTGTTCAGAAGCCACCAAG
LOC_Os08g39510
OsAffx.29599.1.S1_s_at--1155--4392Chr08:24867062..24867086 (25 bp)
GCCACCAAGACAAAGACCTAAATCA
LOC_Os08g39510
OsAffx.29599.1.S1_s_at--430--3033Chr08:24867087..24867108 (22 bp)
AATCCACCAACCTCACATCAAGGAT
LOC_Os08g39510
OsAffx.29599.1.S1_s_at--262--3752Chr08:24867098..24867355 (25 bp)
CTCACATCAAGGATCAGACTCGAAA
LOC_Os08g39510
OsAffx.29599.1.S1_s_at--684--2172Chr08:24867395..24867419 (25 bp)
ACACCCTCACATTTGTCAGTTCATT
LOC_Os08g39510
OsAffx.29599.1.S1_s_at--856--7112Chr08:24867409..24867433 (25 bp)
GTCAGTTCATTCCTCAAGTCAAGAT
LOC_Os08g39510
OsAffx.29599.1.S1_s_at--17--2152Chr08:24867455..24867479 (25 bp)
ACAGATGAGGGCAACTCTGGATCTC
LOC_Os08g39510
OsAffx.29599.1.S1_s_at--558--10772Chr08:24867562..24867586 (25 bp)
TTGTTGGAAGCTTTTCAAGGTTGTG
LOC_Os08g39510
OsAffx.29599.1.S1_s_at--637--3212Chr08:24867577..24867601 (25 bp)
CAAGGTTGTGGATGTTCCATCAAAA
LOC_Os08g39510
Target Sequence 
GCCTTCATGGATAGGGAGCGCCGATTGGCAAGCATGGAGTCCAAGAACCACAGCAAGGGGAAGAAATCATCAGAAGCTTG
TCCAGGCAGCAGCCACCTCGCCTCTGTTCAGAAGCCACCAAGACAAAGACCTAAATCAAATCCACCAACCTCACATCAAG
GATCAGACTCGAAAAATGAAGAATTTTCTAAGCCGTCTGTTTCGTCTGATAGCACACCCTCACATTTGTCAGTTCATTCC
TCAAGTCAAGATAAGGAAGTGGATGGGGAATCTACAGATGAGGGCAACTCTGGATCTCCAGGATCAAAGAGGAAAGGGAA
ACGAAAGAAGGGTATTTTTGTATCCCCTACAAAGAGTGTGGCAAGGGTTAAGCGTTCAGATTGTTGGAAGCTTTTCAAGG
TTGTGGATGTTCCATCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29599.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis