Browse Element(s) Details


Os.49559.1.S1_at

Description gb:AK067190.1
DB_XREF= gi:32977208
TID=Os.49559.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49559 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094E14, full insert sequence.
FL= gb:AK067190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3949010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39460Os.52825.1.S1_at11/118+24832923..24834505Protein kinase domain containing protein, expressed
LOC_Os08g39470OsAffx.17418.1.S1_at10/118+24838102..24840776hypothetical protein
LOC_Os08g39480NANA8+24843443..24843772hypothetical protein
LOC_Os08g39490Os.49559.1.S1_at10/118+24854032..24858377expressed protein
LOC_Os08g39500Os.7955.1.A1_at6/118+24860221..2486164460S ribosomal protein L31, putative, expressed
LOC_Os08g39510OsAffx.29599.1.S1_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39510OsAffx.29599.1.S1_s_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39520OsAffx.29600.2.S1_s_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39520OsAffx.29600.1.S1_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39530Os.55426.1.S1_at4/118+24873097..24873312hypothetical protein
LOC_Os08g39540OsAffx.17420.1.S1_at11/118+24880065..24880589Zinc knuckle family protein
LOC_Os08g39550Os.47490.1.S1_at10/118+24882912..24884520Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49559.1.S1_at--89--8491Chr08:24857022..24857046 (25 bp)
TGGCGGACACTGGTGGCAATGCAAA
LOC_Os08g39490
Os.49559.1.S1_at--899--5651Chr08:24857051..24857075 (25 bp)
GACAGGAGAGCGTCAATGGTCCAGA
LOC_Os08g39490
Os.49559.1.S1_at--631--8851Chr08:24857098..24857122 (25 bp)
TGATCTGGATGACCTGGATTCTCCC
LOC_Os08g39490
Os.49559.1.S1_at--581--531Chr08:24857128..24857152 (25 bp)
ATCCCTTATCGACAAAAGCGCTCCG
LOC_Os08g39490
Os.49559.1.S1_at--572--4591Chr08:24857147..24857171 (25 bp)
GCTCCGCCTTTGCTGTCTAAAGGTA
LOC_Os08g39490
Os.49559.1.S1_at--494--6971Chr08:24857169..24857193 (25 bp)
GTAGCGCGCATTTTACTGCTCAAAG
LOC_Os08g39490
Os.49559.1.S1_at--176--1451Chr08:24857279..24857303 (25 bp)
AGAATCTCTTCTTTAGCTACCTTAA
LOC_Os08g39490
Os.49559.1.S1_at--679--1231Chr08:24857349..24857373 (25 bp)
AGTTGCTCACTTGCAGAGCTAGTTA
LOC_Os08g39490
Os.49559.1.S1_at--728--5471NONE
GAACTTTCTCTGTTGTCTGTTGGAA
NONE
Os.49559.1.S1_at--164--5531Chr08:24857525..24857549 (25 bp)
GAAAAGATGTTCTACCTGGACAACA
LOC_Os08g39490
Os.49559.1.S1_at--1082--8431Chr08:24857557..24857581 (25 bp)
GGCCAGATTCTGATGCATGATTTGT
LOC_Os08g39490
Target Sequence 
TGGCGGACACTGGTGGCAATGCAAAGCTAGACAGGAGAGCGTCAATGGTCCAGAGGAGAGGATACACCAGTGATGATGAT
CTGGATGACCTGGATTCTCCCCTCGCATCCCTTATCGACAAAAGCGCTCCGCCTTTGCTGTCTAAAGGTAGCGCGCATTT
TACTGCTCAAAGAGGAGTTTCCATGGAGAATGCCAGATACACATTCCTGAGAGAGGTATGGTTGGAGAGGCAGTGATTGG
TGAACCTGTACAAATCCAGAATCTCTTCTTTAGCTACCTTAAAAAGGGTTGGGAAGGAAAACCTGCTGAGGTGAAACCTT
TGAGANGNAAGTTGCTCACTTGCAGAGCTAGTTAACTAAACAAGAATGGCTACTGTCAAAATGCAAACAATTTCGTGTAC
ATTCATATACATATGTTGTTCGTTTGTAGTATAATAGAAGCAAGCCAGAAATGAACTTTCTCTGTTGTCTGTTGGAACTA
AAGAATGTGATGTCCCATGGGAAACGAAAAGATGTTCTACCTGGACAACATTATGTAGGCCAGATTCTGATGCATGATTT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis