Browse Element(s) Details


Os.52825.1.S1_at

Description gb:AK069460.1
DB_XREF= gi:32979484
TID=Os.52825.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022B21, full insert sequence.
FL= gb:AK069460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3946011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39440Os.7534.2.S1_a_at11/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39440Os.2240.2.A1_at1/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39450Os.12139.1.S1_at2/118+24821094..24822077Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os08g39460Os.52825.1.S1_at11/118+24832923..24834505Protein kinase domain containing protein, expressed
LOC_Os08g39470OsAffx.17418.1.S1_at10/118+24838102..24840776hypothetical protein
LOC_Os08g39480NANA8+24843443..24843772hypothetical protein
LOC_Os08g39490Os.49559.1.S1_at10/118+24854032..24858377expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52825.1.S1_at--106--4031Chr08:24833944..24833968 (25 bp)
CGTTCCGGAACGTGCTCCTCAAGGA
LOC_Os08g39460
Os.52825.1.S1_at--36--3091Chr08:24834217..24834241 (25 bp)
AATACTTCGATAAGCTTCACCAGCC
LOC_Os08g39460
Os.52825.1.S1_at--622--7191Chr08:24834269..24834293 (25 bp)
GTCGGAGTTCTCGTCGGAGTTCTAA
LOC_Os08g39460
Os.52825.1.S1_at--829--10571Chr08:24834276..24834300 (25 bp)
TTCTCGTCGGAGTTCTAATCTATCT
LOC_Os08g39460
Os.52825.1.S1_at--859--9751Chr08:24834291..24834315 (25 bp)
TAATCTATCTAACGTGGCTGCTGCC
LOC_Os08g39460
Os.52825.1.S1_at--555--9251Chr08:24834323..24834347 (25 bp)
TCCTCCTACCTTTTCTTTGGGTCAT
LOC_Os08g39460
Os.52825.1.S1_at--61--8611Chr08:24834357..24834381 (25 bp)
TGGTCCTCGTTAGGTTACTATTTTG
LOC_Os08g39460
Os.52825.1.S1_at--412--8351Chr08:24834422..24834446 (25 bp)
GGCGGCAATGTAAATTCGGTGTAGA
LOC_Os08g39460
Os.52825.1.S1_at--1145--10031Chr08:24834443..24834467 (25 bp)
TAGAGGCTGTGGAGATGTGCAAAAC
LOC_Os08g39460
Os.52825.1.S1_at--326--3271Chr08:24834467..24834491 (25 bp)
CAACATTTTTGGAGGGCTGTCGCAC
LOC_Os08g39460
Os.52825.1.S1_at--320--1091Chr08:24834479..24834503 (25 bp)
AGGGCTGTCGCACGTGCACGTTTCT
LOC_Os08g39460
Target Sequence 
CGTTCCGGAACGTGCTCCTCAAGGACGTGGAGTTCGCCGGCGACAGCCGCCGCCGGCTGCCGGAGCTCACCGACCTCATC
TCGCGGCTGCTGGAGAGGGACCCCAGGAAGAGGCTGGGGTACCAAGGCGGCGCCGACGAGGTCCGAGCTCACCCGTTCTT
CGCCGGCGTGGCGTGGGACATGCTCGACGTGGTGTCCCGGCCGCCCTACATCCCGCCGCCGGCTGACGACGGCGACGAGG
TAGTCGGCGACGGAGAAGACTTCAGCATAAGAGAATACTTCGATAAGCTTCACCAGCCGCCGCCGCCGGAGTCGGAGAGC
TCCTCGTCGGAGTTCTCGTCGGAGTTCTAATCTATCTAACGTGGCTGCTGCCTCTGTACTCCTCCTACCTTTTCTTTGGG
TCATTTTTCGGTTTGGTCCTCGTTAGGTTACTATTTTGTAACGAAGGGGCTGAGGGTGCGTGTATATACGTGGAGAGGGG
CGGCAATGTAAATTCGGTGTAGAGGCTGTGGAGATGTGCAAAACAACATTTTTGGAGGGCTGTCGCACGTGCACGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis