Browse Element(s) Details


OsAffx.31671.1.S1_at

Description tigr:9640.m00938
TID=OsAffx.31671.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1000011/11Transposable element protein, putative, Transposase_28
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09990OsAffx.435.1.S1_at3/1112+5288205..5293586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g09990OsAffx.16946.1.S1_at1/1112+5288205..5293586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10000OsAffx.31671.1.S1_at11/1112+5294432..5298002Transposable element protein, putative, Transposase_28
LOC_Os12g10010OsAffx.31672.1.S1_at11/1112+5300720..5302470hypothetical protein
LOC_Os12g10020OsAffx.31673.1.S1_at11/1112+5308741..5309115hypothetical protein
LOC_Os12g10030OsAffx.22896.1.S1_x_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10030OsAffx.1331.1.S1_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10030Os.26833.2.S1_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10040Os.45173.1.S1_x_at3/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040OsAffx.20691.1.A1_x_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040Os.45173.3.S1_x_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040OsAffx.20877.1.S1_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10050NANA12+5321142..5324477retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31671.1.S1_at--284--10391Chr12:5295495..5295519 (25 bp)
TTTTCGGAATGGACCCTGCAAGCCG
LOC_Os12g10000
OsAffx.31671.1.S1_at--915--2651Chr12:5295476..5295500 (25 bp)
AAGCCGGTGGCGCAATCTCCACTGC
LOC_Os12g10000
OsAffx.31671.1.S1_at--431--4991Chr12:5295448..5295469 (22 bp)
GCATGCGGCGATTGCTGCGCACTCC
LOC_Os12g10000
OsAffx.31671.1.S1_at--844--9151Chr12:5295392..5295454 (25 bp)
TGCGCACTCCGGCTGCGAACATATC
LOC_Os12g10000
OsAffx.31671.1.S1_at--618--4511Chr12:5295367..5295391 (25 bp)
GCCGAGTTTCCCAACTATGTGAAAG
LOC_Os12g10000
OsAffx.31671.1.S1_at--1018--8631Chr12:5295337..5295361 (25 bp)
TGGGAGATCAGTTCGCAGGACGTTT
LOC_Os12g10000
OsAffx.31671.1.S1_at--1058--6431Chr12:5295332..5295356 (25 bp)
GATCAGTTCGCAGGACGTTTTGCCT
LOC_Os12g10000
OsAffx.31671.1.S1_at--176--971Chr12:5295321..5295345 (25 bp)
AGGACGTTTTGCCTGCGCTTCGCGC
LOC_Os12g10000
OsAffx.31671.1.S1_at--15--8851Chr12:5294559..5294583 (25 bp)
TGATCTCCAAGCGTCGATACAGTTT
LOC_Os12g10000
OsAffx.31671.1.S1_at--441--7211Chr12:5294547..5294571 (25 bp)
GTCGATACAGTTTGGCCTGTGTTTC
LOC_Os12g10000
OsAffx.31671.1.S1_at--388--3751Chr12:5294509..5294533 (25 bp)
CTCAGGGTCGTGTACGATGTTAGTG
LOC_Os12g10000
Target Sequence 
TTTTCGGAATGGACCCTGCAAGCCGGTGGCGCAATCTCCACTGCGCCACCGCATGCGGCGATTGCTGCGCACTCCGGCTG
CGAACATATCGCCGAGTTTCCCAACTATGTGAAAGGGGACTGGGAGATCAGTTCGCAGGACGTTTTGCCTGCGCTTCGCG
CGTGGTGGTGGCAGTTTTGGCAGAAGGACGGCCGATCCACTGCCAAGGCACGCCTTCTGGAGCAGCTGGCGAAGGCGGAG
GACCAGGGCGAAGAGGAGGACGCGGCGGCTGGAGTGGGTGGAGGCGATGCCCAAGATCACCCAGAGGTTGTCGGCTGGAT
GCGGGCGCACCTTAGGCAGACCCTGGAGGACTACGATCGTGTTCATAAAAAGCGTTTGGAAGACATGGTTCACTTTTGGC
GGAACCATCAGAAGACCGATCGGCAGGAGGTGATCTCCAAGCGTCGATACAGTTTGGCCTGTGTTTCGCCCCCATCCCCT
CTCAGGGTCGTGTACGATGTTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis