Browse Element(s) Details


Os.27553.1.S1_a_at

Description gb:AK059613.1
DB_XREF= gi:32969631
TID=Os.27553.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F11, full insert sequence.
FL= gb:AK101282.1 gb:AK059613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2730011/11RNA-binding protein Luc7-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27260OsAffx.28619.1.S1_at11/117+15845706..15846242hypothetical protein
LOC_Os07g27269NANA7+15847601..15847922NA
LOC_Os07g27280OsAffx.5458.1.S1_at11/117+15850535..15852833hypothetical protein
LOC_Os07g27290OsAffx.10222.1.S1_x_at2/117+15858552..15861277hypothetical protein
LOC_Os07g27290Os.45902.1.A1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27290Os.51841.1.S1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27290OsAffx.22442.1.S1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27300Os.27553.1.S1_a_at11/117+15867303..15872372RNA-binding protein Luc7-like 1, putative, expressed
LOC_Os07g27300Os.27553.2.S1_at11/117+15867303..15872372RNA-binding protein Luc7-like 1, putative, expressed
LOC_Os07g27310OsAffx.5459.1.S1_at11/117+15874487..15879159CRAL/TRIO, N-terminus family protein, expressed
LOC_Os07g27320Os.7755.1.S1_at11/117+15882663..15888337glycosyl hydrolase family 10 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27553.1.S1_a_at--30--5531Chr07:15868477..15868501 (25 bp)
GAAAGAGACAGACACCGATATAGGA
LOC_Os07g27300
Os.27553.1.S1_a_at--967--5631Chr07:15868467..15868491 (25 bp)
GACACCGATATAGGAGTGATGACAT
LOC_Os07g27300
Os.27553.1.S1_a_at--636--1031Chr07:15868414..15868438 (25 bp)
AGGTCTCGTTCTCCAAGCAGGCATG
LOC_Os07g27300
Os.27553.1.S1_a_at--977--911Chr07:15868396..15868420 (25 bp)
AGGCATGGCCCAGATCAGTGAACAT
LOC_Os07g27300
Os.27553.1.S1_a_at--355--8411Chr07:15868390..15868414 (25 bp)
GGCCCAGATCAGTGAACATATAGAT
LOC_Os07g27300
Os.27553.1.S1_a_at--768--3531Chr07:15868374..15868398 (25 bp)
CATATAGATAGTTTTATTCCGAGTT
LOC_Os07g27300
Os.27553.1.S1_a_at--172--1591Chr07:15868246..15868270 (25 bp)
AGCTCTGTTGGGACCCTACAGTCTT
LOC_Os07g27300
Os.27553.1.S1_a_at--685--5811Chr07:15868235..15868259 (25 bp)
GACCCTACAGTCTTCCTTTTAGAGG
LOC_Os07g27300
Os.27553.1.S1_a_at--1003--8751Chr07:15868188..15868212 (25 bp)
TGTTTACCTTTCCTAGTATTTTGAG
LOC_Os07g27300
Os.27553.1.S1_a_at--498--9192Chr07:15868178..15868202 (25 bp)
TCCTAGTATTTTGAGTTACCTATAT
LOC_Os07g27300
Os.27553.1.S1_a_at--120--3571Chr07:15868150..15868174 (25 bp)
CATACAGTGAGGTTTTGTTTCAACA
LOC_Os07g27300
Target Sequence 
GAAAGAGACAGACACCGATATAGGAGTGATGACATGAGAAAGGACAGGAGTAGAGTGAGGANCAGGTCTCGTTCTCCAAG
CAGGCATGGCCCAGATCAGTGAACATATAGATAGTTTTATTCCGAGTTAAAACTCATGAGGTAGACCATTATGTCCCTTT
CGCCATTTAACCTGTTGTACAAATGAGTTTTGCGATGTGTTGCGCTTGTTGAATCTCTGTTCTGCTGTAACAGCTCTGTT
GGGACCCTACAGTCTTCCTTTTAGAGGGGAAAAAATATCAGGTAGGTATTGTTTACCTTTCCTAGTATTTTGAGTTACCT
ATATTAACATACAGTGAGGTTTTGTTTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27553.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis