Browse Element(s) Details


OsAffx.16352.1.S1_at

Description tigr:9635.m02065
TID=OsAffx.16352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2196011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g21950OsAffx.25367.1.S1_at1/117+12270751..12273155retrotransposon, putative, centromere-specific
LOC_Os07g21960OsAffx.16352.1.S1_at11/117+12281188..12283002expressed protein
LOC_Os07g21970NANA7+12288321..12289635hypothetical protein
LOC_Os07g21980OsAffx.16354.1.S1_at11/117+12290491..12294159hypothetical protein
LOC_Os07g21980OsAffx.16354.1.S1_x_at11/117+12290491..12294159hypothetical protein
LOC_Os07g21990NANA7+12296952..12299406retrotransposon protein, putative, unclassified
LOC_Os07g22000OsAffx.22711.4.A1_x_at2/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22000OsAffx.25367.1.S1_at1/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22000OsAffx.22927.1.S1_x_at1/117+12300539..12309218retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16352.1.S1_at--632--8471Chr07:12282425..12282449 (25 bp)
TGGCTGCCTGGGTCAACATGGTTGC
LOC_Os07g21960
OsAffx.16352.1.S1_at--329--7091Chr07:12282436..12282460 (25 bp)
GTCAACATGGTTGCGCTGACGGCGT
LOC_Os07g21960
OsAffx.16352.1.S1_at--172--8951Chr07:12282452..12282476 (25 bp)
TGACGGCGTGGCTCCCGGCATACGA
LOC_Os07g21960
OsAffx.16352.1.S1_at--838--4791Chr07:12282462..12282486 (25 bp)
GCTCCCGGCATACGACCTCTTGGTG
LOC_Os07g21960
OsAffx.16352.1.S1_at--659--3551Chr07:12282543..12282567 (25 bp)
CATCTGGATCGGGCTGGAGCTGTCA
LOC_Os07g21960
OsAffx.16352.1.S1_at--615--3971Chr07:12282610..12282634 (25 bp)
CGGTGGGCAGGAGCACGGTTGTCAT
LOC_Os07g21960
OsAffx.16352.1.S1_at--199--6871Chr07:12282668..12282692 (25 bp)
GTTTGTCGGAGGCATTCGCGGCGAT
LOC_Os07g21960
OsAffx.16352.1.S1_at--375--9431Chr07:12282692..12282716 (25 bp)
TCGGGCTGAACGAGCCGTGCAATAA
LOC_Os07g21960
OsAffx.16352.1.S1_at--201--1871Chr07:12282701..12282725 (25 bp)
ACGAGCCGTGCAATAAGGAGTCATC
LOC_Os07g21960
OsAffx.16352.1.S1_at--873--5171Chr07:12282710..12282734 (25 bp)
GCAATAAGGAGTCATCGGAGAGCAT
LOC_Os07g21960
OsAffx.16352.1.S1_at--362--1831Chr07:12282772..12282796 (25 bp)
ACGCCGTGGCGTCCGTTGCCTACGA
LOC_Os07g21960
Target Sequence 
TGGCTGCCTGGGTCAACATGGTTGCGCTGACGGCGTGGCTCCCGGCATACGACCTCTTGGTGGTGCCGGCGCTATGGCGG
GTGATCGGGCGGGAGGAGGGGATCAGCCAGCTCCAGCGCATCTGGATCGGGCTGGAGCTGTCAGTGGTGACGATGGCGGT
GGCGGTGGCGGTGGAGCATAGGCGGCGGTGGGCAGGAGCACGGTTGTCATGGGCGTGGATGGTGCCGCAGCAGGCGATGG
CGGGTTTGTCGGAGGCATTCGCGGCGATCGGGCTGAACGAGCCGTGCAATAAGGAGTCATCGGAGAGCATGAGGAGCGTG
GCGGGGGTGCTGGTGCACGCGGCCGCGACGCCGTGGCGTCCGTTGCCTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis