Browse Element(s) Details


OsAffx.5019.1.S1_at

Description tigr:9634.m03371
TID=OsAffx.5019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY133616 AT4g20860T13K14_20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3563011/11Reticuline oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35574Os.55223.1.S1_at11/116+20759709..20760605expressed protein
LOC_Os06g35580NANA6+20762726..20764144retrotransposon protein, putative, unclassified
LOC_Os06g35590Os.12317.1.S1_at11/116+20766659..20768687Reticuline oxidase precursor, putative, expressed
LOC_Os06g35600OsAffx.16354.1.S1_x_at1/116+20771755..20774043Transposable element protein, putative, Retrotrans_gag
LOC_Os06g35610NANA6+20775767..20776162hypothetical protein
LOC_Os06g35620NANA6+20782545..20783027hypothetical protein
LOC_Os06g35630OsAffx.5019.1.S1_at11/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35630Os.9708.1.S1_at11/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35630OsAffx.11451.4.S1_x_at1/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35639NANA6+20787240..20788926NA
LOC_Os06g35650Os.53599.1.S1_at11/116+20807197..20809008Reticuline oxidase precursor, putative, expressed
LOC_Os06g35650OsAffx.11451.4.S1_x_at1/116+20807197..20809008Reticuline oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5019.1.S1_at--472--1231Chr06:20784096..20784120 (25 bp)
AGTTCTGGAACCCAAGCACGCCGGT
LOC_Os06g35630
OsAffx.5019.1.S1_at--990--8551Chr06:20784072..20784096 (25 bp)
TGGAGGCGCTCCTCAACCGGAGGAC
LOC_Os06g35630
OsAffx.5019.1.S1_at--966--8011Chr06:20784054..20784078 (25 bp)
GGAGGACCAGCCTGAGCACCTTCAC
LOC_Os06g35630
OsAffx.5019.1.S1_at--412--551Chr06:20783998..20784022 (25 bp)
ATCCCGTCGGACGTGTGGAAGAACA
LOC_Os06g35630
OsAffx.5019.1.S1_at--351--8511Chr06:20783983..20784007 (25 bp)
TGGAAGAACATCCTCCCGTGGTTCA
LOC_Os06g35630
OsAffx.5019.1.S1_at--388--1171Chr06:20783847..20783871 (25 bp)
AGTACATCGCGTACTGGTCCGGCGA
LOC_Os06g35630
OsAffx.5019.1.S1_at--54--9651Chr06:20783799..20783823 (25 bp)
TCAGTGGCCTGTACGCGTTCATGGA
LOC_Os06g35630
OsAffx.5019.1.S1_at--298--4631Chr06:20783746..20783770 (25 bp)
GCGTACGTGAACTTCCGGGACCTGG
LOC_Os06g35630
OsAffx.5019.1.S1_at--398--9291Chr06:20783733..20783757 (25 bp)
TCCGGGACCTGGACATCGGCGAGAA
LOC_Os06g35630
OsAffx.5019.1.S1_at--374--6991Chr06:20783651..20783675 (25 bp)
GTACTTCGCCGGCAACTTCGAGAGG
LOC_Os06g35630
OsAffx.5019.1.S1_at--754--831Chr06:20783605..20783629 (25 bp)
ATGGATCCGACCGACTACTTCAGGA
LOC_Os06g35630
Target Sequence 
AGTTCTGGAACCCAAGCACGCCGGTGGAGGCGCTCCTCAACCGGAGGACCAGCCTGAGCACCTTCACCAAGGCCAAGTCC
GACTACGTCCGGCGAGCCATCCCGTCGGACGTGTGGAAGAACATCCTCCCGTGGTTCACCATGAACGGCTCCGGCCAGAT
GCTCCTCGAGCCGATGGGCGGGTTCGTCGGTGGCGTCCCCGCCGCGGCGACGCCGTACCCGCACCGGAGCGGCGTCCTGT
ACAACATCCAGTACATCGCGTACTGGTCCGGCGACGGAACGGCGGCGAACAGGTGGATCAGTGGCCTGTACGCGTTCATG
GAGCCGTACGTCAGCAGCGACCCGAGGGAGGCGTACGTGAACTTCCGGGACCTGGACATCGGCGAGAACGCGGTGGCGCC
GAACGACGTGAGCACGTTCGAGAGCGGCAAGGTGTGGGGGGAGAAGTACTTCGCCGGCAACTTCGAGAGGCTCGCCGCGG
TGAAGGCGGCGATGGATCCGACCGACTACTTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis