Browse Element(s) Details


Os.29068.1.S1_at

Description gb:AK110689.1
DB_XREF= gi:32995898
TID=Os.29068.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0094O03.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A02, full insert sequence.
FL= gb:AK110689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5620011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56149Os.23167.2.S1_at2/113+31941717..31943382NA
LOC_Os03g56160Os.24927.1.S1_at11/113+31947398..31949431lectin receptor kinase 7, putative, expressed
LOC_Os03g56170OsAffx.25732.1.S1_at7/113+31951030..31951416hypothetical protein
LOC_Os03g56180OsAffx.13504.1.S1_at11/113+31952157..31954191Protein kinase domain containing protein, expressed
LOC_Os03g56190Os.12802.1.S1_at11/113+31956589..31958474Cytochrome c oxidase subunit VIa family protein, expressed
LOC_Os03g56200Os.29068.1.S1_at11/113+31958515..31960126expressed protein
LOC_Os03g56220Os.26469.1.S1_at11/113+31967085..31968819expressed protein
LOC_Os03g56234Os.14589.1.S1_at10/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56234Os.52138.1.S1_at4/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56250Os.21066.1.S1_at10/113+31982905..31987314wound and phytochrome signaling involved receptor like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29068.1.S1_at--116--7451Chr03:31958943..31958967 (25 bp)
GTGTAAGCTTGAATCCTCCTGTGAC
LOC_Os03g56200
Os.29068.1.S1_at--614--8671Chr03:31958924..31958948 (25 bp)
TGTGACCGGGTCATTGCGATACAAT
LOC_Os03g56200
Os.29068.1.S1_at--511--8531Chr03:31958859..31958883 (25 bp)
TGGAGCCCACGATTACGAACGACAT
LOC_Os03g56200
Os.29068.1.S1_at--845--10191Chr03:31958782..31958806 (25 bp)
TATTTCGTCCGGTTTGATCTTCAGG
LOC_Os03g56200
Os.29068.1.S1_at--456--2551Chr03:31958755..31958779 (25 bp)
AACTCGCTGCATCTTTCAAGCTGAT
LOC_Os03g56200
Os.29068.1.S1_at--209--10171Chr03:31958720..31958744 (25 bp)
TATCATGTTACCCTGCTTGTTACTA
LOC_Os03g56200
Os.29068.1.S1_at--907--2351Chr03:31958694..31958718 (25 bp)
AAAGCCGTGTATCCATCTAGGCAAT
LOC_Os03g56200
Os.29068.1.S1_at--336--4631Chr03:31958661..31958685 (25 bp)
GCGATGCTCATGTTATTTTCCAGTA
LOC_Os03g56200
Os.29068.1.S1_at--968--6951Chr03:31958617..31958641 (25 bp)
GTAGCAATAGCTTCCGGTAACAATT
LOC_Os03g56200
Os.29068.1.S1_at--907--3151Chr03:31958597..31958621 (25 bp)
CAATTTCTCAACATTTCCCAACTAT
LOC_Os03g56200
Os.29068.1.S1_at--604--7011Chr03:31958548..31958572 (25 bp)
GTACATCCAGCTTTGACAGCGACTG
LOC_Os03g56200
Target Sequence 
GTGTAAGCTTGAATCCTCCTGTGACCGGGTCATTGCGATACAATCACAGAAAAGCAACTGGCAATATTGAGGCACTTGGA
GGCTTGGAGCCCACGATTACGAACGACATGGAAGAAGACTGAAAATGGCAGACGGAATGCTCTCCGGTGACAGCATGAGA
TTATTTCGTCCGGTTTGATCTTCAGGACAACTCGCTGCATCTTTCAAGCTGATATAATCTGTTTATCATGTTACCCTGCT
TGTTACTATAAAGCCGTGTATCCATCTAGGCAATCTTTTTAAGCGATGCTCATGTTATTTTCCAGTAACTTCTTTTTTAT
TTTCCTGTAGCAATAGCTTCCGGTAACAATTTCTCAACATTTCCCAACTATGCAATCTGTTGATCAAGCAAAGAAGTACA
TCCAGCTTTGACAGCGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis