Browse Element(s) Details


OsAffx.19132.1.S1_at

Description tigr:9639.m02986
TID=OsAffx.19132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3284011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32810Os.51030.1.S1_at11/1111+18884307..18887261expressed protein
LOC_Os11g32820OsAffx.7280.1.S1_at11/1111+18889036..18889470expressed protein
LOC_Os11g32830Os.37083.2.S1_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32830Os.47130.4.A1_x_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32840OsAffx.19132.1.S1_at11/1111+18901885..18902214hypothetical protein
LOC_Os11g32850OsAffx.29313.1.S1_at1/1111+18903950..18908542SWIM zinc finger family protein
LOC_Os11g32859Os.11375.1.S1_at4/1111+18910937..18911635hypothetical protein
LOC_Os11g32870OsAffx.31276.1.S1_at10/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.21416.1.S1_at3/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.55225.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.23167.2.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.25582.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57029.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57362.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32880Os.17502.1.S1_at11/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32880Os.23761.1.S1_at1/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19132.1.S1_at--14--6311Chr11:18901927..18901951 (25 bp)
GATGAGGGTTTCGTCAATGTGCCAC
LOC_Os11g32840
OsAffx.19132.1.S1_at--747--6131Chr11:18901930..18901954 (25 bp)
GAGGGTTTCGTCAATGTGCCACTTG
LOC_Os11g32840
OsAffx.19132.1.S1_at--1123--6831Chr11:18901934..18901958 (25 bp)
GTTTCGTCAATGTGCCACTTGTGGG
LOC_Os11g32840
OsAffx.19132.1.S1_at--27--7091Chr11:18901939..18901963 (25 bp)
GTCAATGTGCCACTTGTGGGCTTCA
LOC_Os11g32840
OsAffx.19132.1.S1_at--22--2991Chr11:18901942..18901966 (25 bp)
AATGTGCCACTTGTGGGCTTCAACG
LOC_Os11g32840
OsAffx.19132.1.S1_at--636--3311Chr11:18901949..18901973 (25 bp)
CACTTGTGGGCTTCAACGTGGTGAG
LOC_Os11g32840
OsAffx.19132.1.S1_at--388--7711Chr11:18901974..18902160 (25 bp)
GGGTCCATTGTTGGCTCGCCCACTA
LOC_Os11g32840
OsAffx.19132.1.S1_at--569--6611Chr11:18901983..18902169 (25 bp)
GTTGGCTCGCCCACTACTGGAGAAA
LOC_Os11g32840
OsAffx.19132.1.S1_at--256--8491Chr11:18902151..18902171 (21 bp)
TGGCTCGCCCACTACTGGAGAAAGG
LOC_Os11g32840
OsAffx.19132.1.S1_at--1092--4791Chr11:18902151..18902173 (23 bp)
GCTCGCCCACTACTGGAGAAAGGGA
LOC_Os11g32840
OsAffx.19132.1.S1_at--516--4371Chr11:18902155..18902179 (25 bp)
CCACTACTGGAGAAAGGGAGCGAGA
LOC_Os11g32840
Target Sequence 
GATGAGGGTTTCGTCAATGTGCCACTTGTGGGCTTCAACGTGGTGAGGGGTCCATTGTTGGCTCGCCCACTACTGGAGAA
AGGGAGCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis