Browse Element(s) Details


Os.17502.1.S1_at

Description gb:AK120240.1
DB_XREF= gi:37989863
TID=Os.17502.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.17502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044D20, full insert sequence.
FL= gb:AK120240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3288011/11CarD-like transcriptional regulator family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32840OsAffx.19132.1.S1_at11/1111+18901885..18902214hypothetical protein
LOC_Os11g32850OsAffx.29313.1.S1_at1/1111+18903950..18908542SWIM zinc finger family protein
LOC_Os11g32859Os.11375.1.S1_at4/1111+18910937..18911635hypothetical protein
LOC_Os11g32870OsAffx.31276.1.S1_at10/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.21416.1.S1_at3/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.55225.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.23167.2.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.25582.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57029.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57362.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32880Os.17502.1.S1_at11/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32880Os.23761.1.S1_at1/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32890Os.9988.1.S1_at11/1111+18928832..18929652expressed protein
LOC_Os11g32900Os.22481.1.S1_at11/1111+18931950..18938365retinoblastoma-related protein 1, putative, expressed
LOC_Os11g32910Os.24138.1.A1_at11/1111+18938572..18941264expressed protein
LOC_Os11g32920OsAffx.31277.1.S1_at11/1111+18942762..18943007hypothetical protein
LOC_Os11g32930OsAffx.19133.1.S1_at11/1111+18946620..18947312hypothetical protein
LOC_Os11g32940Os.27512.1.A1_at10/1111+18947503..18952321F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17502.1.S1_at--280--7171Chr11:18920608..18920632 (25 bp)
GTCTCGGCTATCTTGATAGTCAGCA
LOC_Os11g32880
Os.17502.1.S1_at--310--1171Chr11:18920591..18920615 (25 bp)
AGTCAGCAACGGATAGTTCTTGATT
LOC_Os11g32880
Os.17502.1.S1_at--532--10431Chr11:18920565..18920589 (25 bp)
TTATGGCTGTTCTTGTTATACGAAC
LOC_Os11g32880
Os.17502.1.S1_at--738--7391Chr11:18920534..18920558 (25 bp)
GTGTTGGCATTGATGGACTAACCTA
LOC_Os11g32880
Os.17502.1.S1_at--877--2051Chr11:18920329..18920353 (25 bp)
ACTTGGACTCAGCATGACAGTTCAA
LOC_Os11g32880
Os.17502.1.S1_at--1131--771Chr11:18920176..18920200 (25 bp)
ATGTGATGTCATGCACTGACCCATT
LOC_Os11g32880
Os.17502.1.S1_at--992--5091Chr11:18920164..18920188 (25 bp)
GCACTGACCCATTTAATTACCATAA
LOC_Os11g32880
Os.17502.1.S1_at--202--7431Chr11:18920117..18920141 (25 bp)
GTGTTAGCCAGTGAATTGACATATT
LOC_Os11g32880
Os.17502.1.S1_at--791--10371Chr11:18920079..18920103 (25 bp)
TTTTTTGTCCAACCAGATGATGATG
LOC_Os11g32880
Os.17502.1.S1_at--1120--6811Chr11:18920046..18920070 (25 bp)
GTTTAGTGCAACAAAGTGGGATTCC
LOC_Os11g32880
Os.17502.1.S1_at--169--1111Chr11:18920032..18920056 (25 bp)
AGTGGGATTCCTGTACCATAATGCA
LOC_Os11g32880
Target Sequence 
GTCTCGGCTATCTTGATAGTCAGCAACGGATAGTTCTTGATTGNNNNNNNNNNTTATGGCTGTTCTTGTTATACGAACAG
CAAGGTGTTGGCATTGATGGACTAACCTATACACNGAACNTGGAAGATAGTTGGTGGAATGAAGAGCTAGTGAAAATTAT
GTTAGATAGCAATGGCTGATTGATAGTAAATCCATCAACTTGGACTCAGCATGACAGTTCAAACAAACTGGAAGCCTTGA
AAAACTCGGTTAAAATTCTTCCTGACATAATAAGTTNCCTTCAAATATCTTACAGGATTTTTAACAGAACCCCCAAAGTC
TCCATATATTTTTTTCGACTGCATGTATATATGTGATGTCATGCACTGACCCATTTAATTACCATAAATCATGGTGTTTG
ATAAAGAAAGTGTTAGCCAGTGAATTGACATATTTTGTTCGACATGTTTTTTTGTCCAACCAGATGATGATGATAGTTTA
GTTTAGTGCAACAAAGTGGGATTCCTGTACCATAATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis